Hb_002890_160

Information

Type -
Description -
Location Contig2890: 245906-251849
Sequence    

Annotation

kegg
ID rcu:RCOM_0825020
description hypothetical protein
nr
ID XP_012069127.1
description PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
swissprot
ID Q93YU2
description Protein root UVB sensitive 6 OS=Arabidopsis thaliana GN=RUS6 PE=2 SV=1
trembl
ID A0A067L9V0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24893 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30208: 246101-251645 , PASA_asmbl_30209: 250636-251516 , PASA_asmbl_30210: 251697-251932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_160 0.0 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
2 Hb_003531_050 0.0893123397 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
3 Hb_001352_030 0.0903158485 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
4 Hb_003020_070 0.0933748925 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
5 Hb_010534_040 0.0937055129 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
6 Hb_000037_200 0.0960122642 - - RNA binding protein, putative [Ricinus communis]
7 Hb_000922_160 0.0993321892 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
8 Hb_006478_050 0.1008967547 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
9 Hb_000265_170 0.1053435505 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
10 Hb_132356_010 0.1091141181 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_000486_020 0.1094375661 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
12 Hb_000212_270 0.1104138564 - - calreticulin, putative [Ricinus communis]
13 Hb_003119_130 0.1120109834 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
14 Hb_000185_170 0.1131441567 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000283_030 0.1136446887 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
16 Hb_000645_260 0.1156725763 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
17 Hb_000697_020 0.1164056119 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
18 Hb_070136_010 0.1169806078 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
19 Hb_001936_190 0.1178451326 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
20 Hb_015934_060 0.1190019458 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]

Gene co-expression network

sample Hb_002890_160 Hb_002890_160 Hb_003531_050 Hb_003531_050 Hb_002890_160--Hb_003531_050 Hb_001352_030 Hb_001352_030 Hb_002890_160--Hb_001352_030 Hb_003020_070 Hb_003020_070 Hb_002890_160--Hb_003020_070 Hb_010534_040 Hb_010534_040 Hb_002890_160--Hb_010534_040 Hb_000037_200 Hb_000037_200 Hb_002890_160--Hb_000037_200 Hb_000922_160 Hb_000922_160 Hb_002890_160--Hb_000922_160 Hb_003531_050--Hb_001352_030 Hb_001606_010 Hb_001606_010 Hb_003531_050--Hb_001606_010 Hb_001301_260 Hb_001301_260 Hb_003531_050--Hb_001301_260 Hb_000265_170 Hb_000265_170 Hb_003531_050--Hb_000265_170 Hb_000302_360 Hb_000302_360 Hb_003531_050--Hb_000302_360 Hb_001352_030--Hb_000265_170 Hb_001352_030--Hb_001606_010 Hb_001352_030--Hb_010534_040 Hb_005486_020 Hb_005486_020 Hb_001352_030--Hb_005486_020 Hb_014068_010 Hb_014068_010 Hb_003020_070--Hb_014068_010 Hb_000212_270 Hb_000212_270 Hb_003020_070--Hb_000212_270 Hb_003020_070--Hb_003531_050 Hb_003020_070--Hb_001352_030 Hb_001898_100 Hb_001898_100 Hb_003020_070--Hb_001898_100 Hb_010534_040--Hb_000302_360 Hb_000486_020 Hb_000486_020 Hb_010534_040--Hb_000486_020 Hb_010534_040--Hb_001606_010 Hb_000645_260 Hb_000645_260 Hb_010534_040--Hb_000645_260 Hb_000185_170 Hb_000185_170 Hb_000037_200--Hb_000185_170 Hb_000062_050 Hb_000062_050 Hb_000037_200--Hb_000062_050 Hb_078582_010 Hb_078582_010 Hb_000037_200--Hb_078582_010 Hb_000023_130 Hb_000023_130 Hb_000037_200--Hb_000023_130 Hb_000987_020 Hb_000987_020 Hb_000037_200--Hb_000987_020 Hb_070136_010 Hb_070136_010 Hb_000922_160--Hb_070136_010 Hb_002635_020 Hb_002635_020 Hb_000922_160--Hb_002635_020 Hb_001936_190 Hb_001936_190 Hb_000922_160--Hb_001936_190 Hb_006478_050 Hb_006478_050 Hb_000922_160--Hb_006478_050 Hb_093077_010 Hb_093077_010 Hb_000922_160--Hb_093077_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.427597 4.07301 16.2622 6.44554 0.0369803 0.139525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104873 0.0990227 0.156751 2.44761 12.0906

CAGE analysis