Hb_093077_010

Information

Type transcription factor
Description TF Family: G2-like
Location Contig93077: 14479-23925
Sequence    

Annotation

kegg
ID vvi:100250547
description two-component response regulator-like APRR2
nr
ID XP_012074247.1
description PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
swissprot
ID Q6LA43
description Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2
trembl
ID A0A067KJ37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10297 PE=4 SV=1
Gene Ontology
ID GO:0003677
description two-component response regulator-like aprr2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62835: 14428-24325 , PASA_asmbl_62836: 23026-24006 , PASA_asmbl_62837: 14870-14991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093077_010 0.0 transcription factor TF Family: G2-like PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
2 Hb_000922_160 0.0999097834 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
3 Hb_003416_020 0.1099039559 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
4 Hb_006478_050 0.1140953779 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
5 Hb_000891_010 0.1169949945 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000917_200 0.1222141003 - - hypothetical protein PRUPE_ppa010555mg [Prunus persica]
7 Hb_001775_120 0.1258051568 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
8 Hb_001936_190 0.1261244202 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
9 Hb_002635_020 0.1264016346 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
10 Hb_000635_050 0.1275705919 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
11 Hb_001141_350 0.1288161145 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
12 Hb_001104_150 0.1290279245 - - PREDICTED: protein ROS1 [Jatropha curcas]
13 Hb_003145_010 0.1315791476 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
14 Hb_001629_120 0.133553751 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
15 Hb_119066_010 0.134359414 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
16 Hb_000049_280 0.1349436062 - - PREDICTED: ribokinase-like isoform X4 [Jatropha curcas]
17 Hb_000103_230 0.1368387038 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]
18 Hb_002890_200 0.1369669369 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
19 Hb_002217_360 0.1372165872 - - PREDICTED: nuclear poly(A) polymerase 3 isoform X1 [Jatropha curcas]
20 Hb_000856_200 0.1375367157 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_093077_010 Hb_093077_010 Hb_000922_160 Hb_000922_160 Hb_093077_010--Hb_000922_160 Hb_003416_020 Hb_003416_020 Hb_093077_010--Hb_003416_020 Hb_006478_050 Hb_006478_050 Hb_093077_010--Hb_006478_050 Hb_000891_010 Hb_000891_010 Hb_093077_010--Hb_000891_010 Hb_000917_200 Hb_000917_200 Hb_093077_010--Hb_000917_200 Hb_001775_120 Hb_001775_120 Hb_093077_010--Hb_001775_120 Hb_070136_010 Hb_070136_010 Hb_000922_160--Hb_070136_010 Hb_002635_020 Hb_002635_020 Hb_000922_160--Hb_002635_020 Hb_001936_190 Hb_001936_190 Hb_000922_160--Hb_001936_190 Hb_000922_160--Hb_006478_050 Hb_002890_160 Hb_002890_160 Hb_000922_160--Hb_002890_160 Hb_000679_080 Hb_000679_080 Hb_003416_020--Hb_000679_080 Hb_002662_110 Hb_002662_110 Hb_003416_020--Hb_002662_110 Hb_126933_020 Hb_126933_020 Hb_003416_020--Hb_126933_020 Hb_000283_030 Hb_000283_030 Hb_003416_020--Hb_000283_030 Hb_007765_130 Hb_007765_130 Hb_003416_020--Hb_007765_130 Hb_001629_120 Hb_001629_120 Hb_006478_050--Hb_001629_120 Hb_000037_200 Hb_000037_200 Hb_006478_050--Hb_000037_200 Hb_006478_050--Hb_002890_160 Hb_000260_410 Hb_000260_410 Hb_006478_050--Hb_000260_410 Hb_001352_030 Hb_001352_030 Hb_006478_050--Hb_001352_030 Hb_000891_010--Hb_000922_160 Hb_000891_010--Hb_006478_050 Hb_000891_010--Hb_001775_120 Hb_000891_010--Hb_002890_160 Hb_000891_010--Hb_001936_190 Hb_000917_200--Hb_006478_050 Hb_000062_050 Hb_000062_050 Hb_000917_200--Hb_000062_050 Hb_016687_010 Hb_016687_010 Hb_000917_200--Hb_016687_010 Hb_000917_200--Hb_000891_010 Hb_008878_020 Hb_008878_020 Hb_000917_200--Hb_008878_020 Hb_001104_150 Hb_001104_150 Hb_001775_120--Hb_001104_150 Hb_000207_350 Hb_000207_350 Hb_001775_120--Hb_000207_350 Hb_001775_120--Hb_000922_160 Hb_031385_010 Hb_031385_010 Hb_001775_120--Hb_031385_010 Hb_004855_020 Hb_004855_020 Hb_001775_120--Hb_004855_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.231519 10.5407 26.6548 20.0473 1.41531 1.74701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.279658 0.0611295 0.513943 6.82052 26.5222

CAGE analysis