Hb_000207_350

Information

Type -
Description -
Location Contig207: 444741-466934
Sequence    

Annotation

kegg
ID pxb:103940445
description embryogenesis-associated protein EMB8-like
nr
ID XP_012092760.1
description PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
swissprot
ID Q40863
description Embryogenesis-associated protein EMB8 OS=Picea glauca GN=EMB8 PE=2 SV=1
trembl
ID A0A067JBY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09845 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21336: 444645-446142 , PASA_asmbl_21337: 446247-466683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_350 0.0 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
2 Hb_004855_020 0.075026316 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
3 Hb_001104_150 0.083753189 - - PREDICTED: protein ROS1 [Jatropha curcas]
4 Hb_001123_310 0.0871663772 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
5 Hb_010868_040 0.0894804228 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
6 Hb_010381_040 0.0916611777 - - beta-galactosidase, putative [Ricinus communis]
7 Hb_005568_020 0.0965806679 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
8 Hb_000227_400 0.1017053252 - - lipoxygenase, putative [Ricinus communis]
9 Hb_004994_330 0.105078976 - - DNA binding protein, putative [Ricinus communis]
10 Hb_001775_120 0.1053601236 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
11 Hb_002701_070 0.1106808668 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
12 Hb_005144_060 0.1150516051 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
13 Hb_000120_300 0.1153948257 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
14 Hb_001377_120 0.1171900854 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
15 Hb_008511_040 0.1184967793 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
16 Hb_000465_410 0.1186367693 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000735_060 0.118897924 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
18 Hb_000008_200 0.1195467998 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
19 Hb_006816_250 0.119678161 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
20 Hb_006133_020 0.1211524684 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]

Gene co-expression network

sample Hb_000207_350 Hb_000207_350 Hb_004855_020 Hb_004855_020 Hb_000207_350--Hb_004855_020 Hb_001104_150 Hb_001104_150 Hb_000207_350--Hb_001104_150 Hb_001123_310 Hb_001123_310 Hb_000207_350--Hb_001123_310 Hb_010868_040 Hb_010868_040 Hb_000207_350--Hb_010868_040 Hb_010381_040 Hb_010381_040 Hb_000207_350--Hb_010381_040 Hb_005568_020 Hb_005568_020 Hb_000207_350--Hb_005568_020 Hb_004855_020--Hb_010868_040 Hb_000227_400 Hb_000227_400 Hb_004855_020--Hb_000227_400 Hb_004855_020--Hb_010381_040 Hb_004855_020--Hb_001104_150 Hb_004855_020--Hb_001123_310 Hb_001775_120 Hb_001775_120 Hb_001104_150--Hb_001775_120 Hb_001104_150--Hb_005568_020 Hb_005730_110 Hb_005730_110 Hb_001104_150--Hb_005730_110 Hb_022092_110 Hb_022092_110 Hb_001104_150--Hb_022092_110 Hb_004218_200 Hb_004218_200 Hb_001104_150--Hb_004218_200 Hb_000120_300 Hb_000120_300 Hb_001123_310--Hb_000120_300 Hb_000483_080 Hb_000483_080 Hb_001123_310--Hb_000483_080 Hb_002965_160 Hb_002965_160 Hb_001123_310--Hb_002965_160 Hb_001123_310--Hb_010381_040 Hb_006133_020 Hb_006133_020 Hb_001123_310--Hb_006133_020 Hb_010868_040--Hb_000227_400 Hb_000940_030 Hb_000940_030 Hb_010868_040--Hb_000940_030 Hb_000243_060 Hb_000243_060 Hb_010868_040--Hb_000243_060 Hb_010868_040--Hb_010381_040 Hb_010381_040--Hb_000243_060 Hb_002701_070 Hb_002701_070 Hb_010381_040--Hb_002701_070 Hb_000735_060 Hb_000735_060 Hb_005568_020--Hb_000735_060 Hb_002078_390 Hb_002078_390 Hb_005568_020--Hb_002078_390 Hb_003606_050 Hb_003606_050 Hb_005568_020--Hb_003606_050 Hb_000008_200 Hb_000008_200 Hb_005568_020--Hb_000008_200 Hb_128196_010 Hb_128196_010 Hb_005568_020--Hb_128196_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.715803 3.76243 21.2276 15.3174 0.393738 0.553619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10188 0.454115 0.779781 4.90128 12.2489

CAGE analysis