Hb_001775_120

Information

Type -
Description -
Location Contig1775: 111557-121000
Sequence    

Annotation

kegg
ID pop:POPTR_0009s15080g
description POPTRDRAFT_804052; xanthine/uracil permease family protein
nr
ID XP_012076199.1
description PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
swissprot
ID Q3E7D0
description Nucleobase-ascorbate transporter 12 OS=Arabidopsis thaliana GN=NAT12 PE=1 SV=3
trembl
ID A0A067KDS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11259 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleobase-ascorbate transporter 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17045: 111666-120792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001775_120 0.0 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
2 Hb_001104_150 0.0925235892 - - PREDICTED: protein ROS1 [Jatropha curcas]
3 Hb_000207_350 0.1053601236 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
4 Hb_000922_160 0.1105065265 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
5 Hb_000891_010 0.111618853 - - conserved hypothetical protein [Ricinus communis]
6 Hb_031385_010 0.1121483954 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
7 Hb_004855_020 0.1149184688 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
8 Hb_010868_040 0.1191347579 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
9 Hb_000227_400 0.1215915889 - - lipoxygenase, putative [Ricinus communis]
10 Hb_000635_050 0.1220032706 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
11 Hb_112064_010 0.1251314688 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
12 Hb_000061_310 0.1253112287 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
13 Hb_002942_140 0.1255989531 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
14 Hb_093077_010 0.1258051568 transcription factor TF Family: G2-like PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
15 Hb_002311_280 0.1298138113 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
16 Hb_002662_110 0.1301579837 - - Kinesin heavy chain, putative [Ricinus communis]
17 Hb_003055_070 0.1336020352 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
18 Hb_000940_030 0.134876343 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
19 Hb_003416_020 0.1352717379 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
20 Hb_001922_110 0.1362302384 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001775_120 Hb_001775_120 Hb_001104_150 Hb_001104_150 Hb_001775_120--Hb_001104_150 Hb_000207_350 Hb_000207_350 Hb_001775_120--Hb_000207_350 Hb_000922_160 Hb_000922_160 Hb_001775_120--Hb_000922_160 Hb_000891_010 Hb_000891_010 Hb_001775_120--Hb_000891_010 Hb_031385_010 Hb_031385_010 Hb_001775_120--Hb_031385_010 Hb_004855_020 Hb_004855_020 Hb_001775_120--Hb_004855_020 Hb_001104_150--Hb_000207_350 Hb_005568_020 Hb_005568_020 Hb_001104_150--Hb_005568_020 Hb_005730_110 Hb_005730_110 Hb_001104_150--Hb_005730_110 Hb_022092_110 Hb_022092_110 Hb_001104_150--Hb_022092_110 Hb_004218_200 Hb_004218_200 Hb_001104_150--Hb_004218_200 Hb_000207_350--Hb_004855_020 Hb_001123_310 Hb_001123_310 Hb_000207_350--Hb_001123_310 Hb_010868_040 Hb_010868_040 Hb_000207_350--Hb_010868_040 Hb_010381_040 Hb_010381_040 Hb_000207_350--Hb_010381_040 Hb_000207_350--Hb_005568_020 Hb_070136_010 Hb_070136_010 Hb_000922_160--Hb_070136_010 Hb_002635_020 Hb_002635_020 Hb_000922_160--Hb_002635_020 Hb_001936_190 Hb_001936_190 Hb_000922_160--Hb_001936_190 Hb_006478_050 Hb_006478_050 Hb_000922_160--Hb_006478_050 Hb_002890_160 Hb_002890_160 Hb_000922_160--Hb_002890_160 Hb_093077_010 Hb_093077_010 Hb_000922_160--Hb_093077_010 Hb_000891_010--Hb_000922_160 Hb_000891_010--Hb_006478_050 Hb_000891_010--Hb_093077_010 Hb_000891_010--Hb_002890_160 Hb_000891_010--Hb_001936_190 Hb_000230_360 Hb_000230_360 Hb_031385_010--Hb_000230_360 Hb_001048_100 Hb_001048_100 Hb_031385_010--Hb_001048_100 Hb_000061_310 Hb_000061_310 Hb_031385_010--Hb_000061_310 Hb_002316_020 Hb_002316_020 Hb_031385_010--Hb_002316_020 Hb_010174_180 Hb_010174_180 Hb_031385_010--Hb_010174_180 Hb_003687_040 Hb_003687_040 Hb_031385_010--Hb_003687_040 Hb_004855_020--Hb_010868_040 Hb_000227_400 Hb_000227_400 Hb_004855_020--Hb_000227_400 Hb_004855_020--Hb_010381_040 Hb_004855_020--Hb_001104_150 Hb_004855_020--Hb_001123_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.25938 6.58458 22.2809 14.2013 1.2007 0.326602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.544887 0.290054 1.13196 6.82649 16.5716

CAGE analysis