Hb_003687_040

Information

Type -
Description -
Location Contig3687: 20251-35567
Sequence    

Annotation

kegg
ID rcu:RCOM_1169130
description hypothetical protein
nr
ID XP_012069860.1
description PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02351 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cop1-interacting isoform 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37907: 20299-23261 , PASA_asmbl_37908: 23408-24622 , PASA_asmbl_37909: 25426-35476 , PASA_asmbl_37910: 32807-33018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_040 0.0 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
2 Hb_000061_310 0.0607742234 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
3 Hb_001019_160 0.0943023819 - - conserved hypothetical protein [Ricinus communis]
4 Hb_031385_010 0.0987102586 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
5 Hb_001040_080 0.1025122301 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
6 Hb_000230_360 0.1047659027 - - PREDICTED: BI1-like protein [Jatropha curcas]
7 Hb_002463_050 0.1106716901 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002897_010 0.1109852344 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
9 Hb_005993_030 0.1154939271 - - putative senescence-associated protein SAG102 [Populus trichocarpa]
10 Hb_000316_060 0.1165842681 - - hypothetical protein CISIN_1g017081mg [Citrus sinensis]
11 Hb_000834_220 0.1191110454 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
12 Hb_001048_100 0.1215463205 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
13 Hb_000731_280 0.1232983734 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
14 Hb_002301_370 0.1234340451 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
15 Hb_004678_030 0.1266131633 - - fructokinase [Manihot esculenta]
16 Hb_002095_050 0.1362953074 - - PREDICTED: uncharacterized protein LOC104447479 [Eucalyptus grandis]
17 Hb_022092_110 0.1388153767 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
18 Hb_000834_180 0.1388195279 - - PREDICTED: kinesin-13A-like isoform X1 [Jatropha curcas]
19 Hb_000320_310 0.1454763162 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
20 Hb_001440_010 0.146339345 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]

Gene co-expression network

sample Hb_003687_040 Hb_003687_040 Hb_000061_310 Hb_000061_310 Hb_003687_040--Hb_000061_310 Hb_001019_160 Hb_001019_160 Hb_003687_040--Hb_001019_160 Hb_031385_010 Hb_031385_010 Hb_003687_040--Hb_031385_010 Hb_001040_080 Hb_001040_080 Hb_003687_040--Hb_001040_080 Hb_000230_360 Hb_000230_360 Hb_003687_040--Hb_000230_360 Hb_002463_050 Hb_002463_050 Hb_003687_040--Hb_002463_050 Hb_000061_310--Hb_000230_360 Hb_000061_310--Hb_031385_010 Hb_000061_310--Hb_001019_160 Hb_001048_100 Hb_001048_100 Hb_000061_310--Hb_001048_100 Hb_002301_370 Hb_002301_370 Hb_000061_310--Hb_002301_370 Hb_000834_220 Hb_000834_220 Hb_001019_160--Hb_000834_220 Hb_001019_160--Hb_000230_360 Hb_001019_160--Hb_031385_010 Hb_001440_010 Hb_001440_010 Hb_001019_160--Hb_001440_010 Hb_031385_010--Hb_000230_360 Hb_031385_010--Hb_001048_100 Hb_002316_020 Hb_002316_020 Hb_031385_010--Hb_002316_020 Hb_010174_180 Hb_010174_180 Hb_031385_010--Hb_010174_180 Hb_001040_080--Hb_000834_220 Hb_001040_080--Hb_001019_160 Hb_001040_080--Hb_000061_310 Hb_005730_110 Hb_005730_110 Hb_001040_080--Hb_005730_110 Hb_000316_060 Hb_000316_060 Hb_001040_080--Hb_000316_060 Hb_000230_360--Hb_002301_370 Hb_000230_360--Hb_001440_010 Hb_000230_360--Hb_000834_220 Hb_002897_010 Hb_002897_010 Hb_002463_050--Hb_002897_010 Hb_004678_030 Hb_004678_030 Hb_002463_050--Hb_004678_030 Hb_000015_150 Hb_000015_150 Hb_002463_050--Hb_000015_150 Hb_002463_050--Hb_000061_310 Hb_000654_050 Hb_000654_050 Hb_002463_050--Hb_000654_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.51529 3.80834 10.6527 7.85887 0.438069 0.681682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0581143 0.0914698 0.205212 4.29125 3.94204

CAGE analysis