Hb_000316_060

Information

Type -
Description -
Location Contig316: 26726-29225
Sequence    

Annotation

kegg
ID tcc:TCM_021944
description Actin 3
nr
ID KDO67622.1
description hypothetical protein CISIN_1g017081mg [Citrus sinensis]
swissprot
ID P30171
description Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1
trembl
ID A0A067FJP5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017081mg PE=3 SV=1
Gene Ontology
ID GO:0005737
description actin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33305: 26633-29225
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000316_060 0.0 - - hypothetical protein CISIN_1g017081mg [Citrus sinensis]
2 Hb_000996_040 0.1160945713 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
3 Hb_003687_040 0.1165842681 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
4 Hb_001040_080 0.1172527638 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
5 Hb_007590_110 0.1217352766 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
6 Hb_001019_160 0.1235892004 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002897_010 0.1283505279 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
8 Hb_004678_030 0.1298303799 - - fructokinase [Manihot esculenta]
9 Hb_000731_280 0.1320414262 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
10 Hb_000027_170 0.135144897 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
11 Hb_003055_080 0.1371093581 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
12 Hb_002965_160 0.1393442483 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
13 Hb_024682_030 0.1413998971 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
14 Hb_000010_440 0.1427329179 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
15 Hb_002639_050 0.1434862248 - - multicopper oxidase, putative [Ricinus communis]
16 Hb_002463_050 0.1449981709 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003573_050 0.1461160348 - - ARF GTPase activator, putative [Ricinus communis]
18 Hb_000834_220 0.1482068995 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
19 Hb_001054_040 0.1484769356 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
20 Hb_008725_100 0.1488324637 - - PREDICTED: histone H1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000316_060 Hb_000316_060 Hb_000996_040 Hb_000996_040 Hb_000316_060--Hb_000996_040 Hb_003687_040 Hb_003687_040 Hb_000316_060--Hb_003687_040 Hb_001040_080 Hb_001040_080 Hb_000316_060--Hb_001040_080 Hb_007590_110 Hb_007590_110 Hb_000316_060--Hb_007590_110 Hb_001019_160 Hb_001019_160 Hb_000316_060--Hb_001019_160 Hb_002897_010 Hb_002897_010 Hb_000316_060--Hb_002897_010 Hb_000862_050 Hb_000862_050 Hb_000996_040--Hb_000862_050 Hb_002639_050 Hb_002639_050 Hb_000996_040--Hb_002639_050 Hb_001195_550 Hb_001195_550 Hb_000996_040--Hb_001195_550 Hb_000395_120 Hb_000395_120 Hb_000996_040--Hb_000395_120 Hb_000809_130 Hb_000809_130 Hb_000996_040--Hb_000809_130 Hb_000061_310 Hb_000061_310 Hb_003687_040--Hb_000061_310 Hb_003687_040--Hb_001019_160 Hb_031385_010 Hb_031385_010 Hb_003687_040--Hb_031385_010 Hb_003687_040--Hb_001040_080 Hb_000230_360 Hb_000230_360 Hb_003687_040--Hb_000230_360 Hb_002463_050 Hb_002463_050 Hb_003687_040--Hb_002463_050 Hb_000834_220 Hb_000834_220 Hb_001040_080--Hb_000834_220 Hb_001040_080--Hb_001019_160 Hb_001040_080--Hb_000061_310 Hb_005730_110 Hb_005730_110 Hb_001040_080--Hb_005730_110 Hb_001782_100 Hb_001782_100 Hb_007590_110--Hb_001782_100 Hb_024682_030 Hb_024682_030 Hb_007590_110--Hb_024682_030 Hb_129996_010 Hb_129996_010 Hb_007590_110--Hb_129996_010 Hb_006351_030 Hb_006351_030 Hb_007590_110--Hb_006351_030 Hb_000417_140 Hb_000417_140 Hb_007590_110--Hb_000417_140 Hb_001019_160--Hb_000834_220 Hb_001019_160--Hb_000230_360 Hb_001019_160--Hb_031385_010 Hb_001440_010 Hb_001440_010 Hb_001019_160--Hb_001440_010 Hb_001019_160--Hb_000061_310 Hb_002897_010--Hb_002463_050 Hb_002897_010--Hb_003687_040 Hb_000320_310 Hb_000320_310 Hb_002897_010--Hb_000320_310 Hb_008250_020 Hb_008250_020 Hb_002897_010--Hb_008250_020 Hb_004678_030 Hb_004678_030 Hb_002897_010--Hb_004678_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.95419 11.288 36.5511 32.5882 0.416735 0.781342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.169973 0.106974 0.651271 11.7334 8.08652

CAGE analysis