Hb_000320_310

Information

Type -
Description -
Location Contig320: 234630-236814
Sequence    

Annotation

kegg
ID rcu:RCOM_0904300
description protein binding protein, putative
nr
ID XP_012092371.1
description PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
swissprot
ID Q7ZUV0
description Ankyrin repeat domain-containing protein 13C OS=Danio rerio GN=ankrd13c PE=2 SV=1
trembl
ID A0A067JMM1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33811: 234673-237392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_310 0.0 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
2 Hb_005000_010 0.0848071778 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
3 Hb_004218_200 0.0997838407 - - Ran GTPase binding protein, putative [Ricinus communis]
4 Hb_010863_030 0.1288353789 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
5 Hb_002897_010 0.1290617734 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
6 Hb_001123_310 0.1369853654 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
7 Hb_001195_550 0.1391063069 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
8 Hb_001040_080 0.1420614168 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
9 Hb_070498_010 0.1435786549 - - receptor kinase, putative [Ricinus communis]
10 Hb_003687_040 0.1454763162 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
11 Hb_006133_020 0.1458617007 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
12 Hb_010683_030 0.1461482427 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000207_350 0.1464511599 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
14 Hb_000274_050 0.1468808216 - - Squalene monooxygenase, putative [Ricinus communis]
15 Hb_003029_120 0.1473357142 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
16 Hb_000227_400 0.1473990029 - - lipoxygenase, putative [Ricinus communis]
17 Hb_001823_090 0.1480767215 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000638_240 0.1498910217 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Prunus mume]
19 Hb_005568_020 0.1502475009 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
20 Hb_002965_160 0.1505984215 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]

Gene co-expression network

sample Hb_000320_310 Hb_000320_310 Hb_005000_010 Hb_005000_010 Hb_000320_310--Hb_005000_010 Hb_004218_200 Hb_004218_200 Hb_000320_310--Hb_004218_200 Hb_010863_030 Hb_010863_030 Hb_000320_310--Hb_010863_030 Hb_002897_010 Hb_002897_010 Hb_000320_310--Hb_002897_010 Hb_001123_310 Hb_001123_310 Hb_000320_310--Hb_001123_310 Hb_001195_550 Hb_001195_550 Hb_000320_310--Hb_001195_550 Hb_004330_020 Hb_004330_020 Hb_005000_010--Hb_004330_020 Hb_000274_050 Hb_000274_050 Hb_005000_010--Hb_000274_050 Hb_005000_010--Hb_004218_200 Hb_005000_010--Hb_010863_030 Hb_002876_200 Hb_002876_200 Hb_005000_010--Hb_002876_200 Hb_003580_050 Hb_003580_050 Hb_004218_200--Hb_003580_050 Hb_001357_050 Hb_001357_050 Hb_004218_200--Hb_001357_050 Hb_001104_150 Hb_001104_150 Hb_004218_200--Hb_001104_150 Hb_028008_040 Hb_028008_040 Hb_004218_200--Hb_028008_040 Hb_005730_110 Hb_005730_110 Hb_004218_200--Hb_005730_110 Hb_010683_030 Hb_010683_030 Hb_010863_030--Hb_010683_030 Hb_010863_030--Hb_002897_010 Hb_010683_070 Hb_010683_070 Hb_010863_030--Hb_010683_070 Hb_001536_020 Hb_001536_020 Hb_010863_030--Hb_001536_020 Hb_002463_050 Hb_002463_050 Hb_002897_010--Hb_002463_050 Hb_003687_040 Hb_003687_040 Hb_002897_010--Hb_003687_040 Hb_000316_060 Hb_000316_060 Hb_002897_010--Hb_000316_060 Hb_008250_020 Hb_008250_020 Hb_002897_010--Hb_008250_020 Hb_004678_030 Hb_004678_030 Hb_002897_010--Hb_004678_030 Hb_000120_300 Hb_000120_300 Hb_001123_310--Hb_000120_300 Hb_000207_350 Hb_000207_350 Hb_001123_310--Hb_000207_350 Hb_000483_080 Hb_000483_080 Hb_001123_310--Hb_000483_080 Hb_002965_160 Hb_002965_160 Hb_001123_310--Hb_002965_160 Hb_010381_040 Hb_010381_040 Hb_001123_310--Hb_010381_040 Hb_006133_020 Hb_006133_020 Hb_001123_310--Hb_006133_020 Hb_169893_010 Hb_169893_010 Hb_001195_550--Hb_169893_010 Hb_008686_010 Hb_008686_010 Hb_001195_550--Hb_008686_010 Hb_070498_010 Hb_070498_010 Hb_001195_550--Hb_070498_010 Hb_002301_400 Hb_002301_400 Hb_001195_550--Hb_002301_400 Hb_001159_090 Hb_001159_090 Hb_001195_550--Hb_001159_090 Hb_002639_050 Hb_002639_050 Hb_001195_550--Hb_002639_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.975581 1.9787 12.3771 9.60552 0.144715 1.0832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0260673 0.184585 0.0774927 2.52466 5.05044

CAGE analysis