Hb_008250_020

Information

Type -
Description -
Location Contig8250: 25188-28448
Sequence    

Annotation

kegg
ID rcu:RCOM_1418540
description E3 ubiquitin ligase PUB14, putative
nr
ID XP_012067161.1
description PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
swissprot
ID Q681N2
description U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2
trembl
ID A0A067L0S1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03090 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59694: 25523-26830 , PASA_asmbl_59695: 25523-26830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008250_020 0.0 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
2 Hb_006153_010 0.1294917685 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
3 Hb_002897_010 0.1305382887 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
4 Hb_001235_160 0.1362612729 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000395_120 0.142379825 - - Stellacyanin, putative [Ricinus communis]
6 Hb_000260_610 0.1430758041 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
7 Hb_002463_050 0.1509238573 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000193_060 0.1509406423 - - PREDICTED: F-box protein At4g35930 [Jatropha curcas]
9 Hb_000996_040 0.1533855109 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
10 Hb_001862_030 0.159763983 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
11 Hb_006060_010 0.1598749853 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
12 Hb_001638_120 0.1599175366 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
13 Hb_003667_020 0.1601744664 - - conserved hypothetical protein 16 [Hevea brasiliensis]
14 Hb_000003_740 0.1700062242 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
15 Hb_003032_060 0.1704751205 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
16 Hb_004712_090 0.1716578684 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
17 Hb_000316_060 0.1728544183 - - hypothetical protein CISIN_1g017081mg [Citrus sinensis]
18 Hb_001541_190 0.1734453864 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
19 Hb_004920_050 0.1741380844 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
20 Hb_013344_010 0.1754193846 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]

Gene co-expression network

sample Hb_008250_020 Hb_008250_020 Hb_006153_010 Hb_006153_010 Hb_008250_020--Hb_006153_010 Hb_002897_010 Hb_002897_010 Hb_008250_020--Hb_002897_010 Hb_001235_160 Hb_001235_160 Hb_008250_020--Hb_001235_160 Hb_000395_120 Hb_000395_120 Hb_008250_020--Hb_000395_120 Hb_000260_610 Hb_000260_610 Hb_008250_020--Hb_000260_610 Hb_002463_050 Hb_002463_050 Hb_008250_020--Hb_002463_050 Hb_003119_040 Hb_003119_040 Hb_006153_010--Hb_003119_040 Hb_000878_120 Hb_000878_120 Hb_006153_010--Hb_000878_120 Hb_006153_010--Hb_000260_610 Hb_000193_060 Hb_000193_060 Hb_006153_010--Hb_000193_060 Hb_015037_010 Hb_015037_010 Hb_006153_010--Hb_015037_010 Hb_002897_010--Hb_002463_050 Hb_003687_040 Hb_003687_040 Hb_002897_010--Hb_003687_040 Hb_000316_060 Hb_000316_060 Hb_002897_010--Hb_000316_060 Hb_000320_310 Hb_000320_310 Hb_002897_010--Hb_000320_310 Hb_004678_030 Hb_004678_030 Hb_002897_010--Hb_004678_030 Hb_001386_100 Hb_001386_100 Hb_001235_160--Hb_001386_100 Hb_001776_130 Hb_001776_130 Hb_001235_160--Hb_001776_130 Hb_002095_050 Hb_002095_050 Hb_001235_160--Hb_002095_050 Hb_000320_040 Hb_000320_040 Hb_001235_160--Hb_000320_040 Hb_001235_160--Hb_006153_010 Hb_000996_040 Hb_000996_040 Hb_000395_120--Hb_000996_040 Hb_004223_080 Hb_004223_080 Hb_000395_120--Hb_004223_080 Hb_004316_020 Hb_004316_020 Hb_000395_120--Hb_004316_020 Hb_000395_120--Hb_000193_060 Hb_000809_130 Hb_000809_130 Hb_000395_120--Hb_000809_130 Hb_000392_170 Hb_000392_170 Hb_000395_120--Hb_000392_170 Hb_013344_010 Hb_013344_010 Hb_000260_610--Hb_013344_010 Hb_006060_010 Hb_006060_010 Hb_000260_610--Hb_006060_010 Hb_007545_110 Hb_007545_110 Hb_000260_610--Hb_007545_110 Hb_002400_050 Hb_002400_050 Hb_000260_610--Hb_002400_050 Hb_003667_020 Hb_003667_020 Hb_000260_610--Hb_003667_020 Hb_004920_050 Hb_004920_050 Hb_000260_610--Hb_004920_050 Hb_002463_050--Hb_004678_030 Hb_002463_050--Hb_003687_040 Hb_000015_150 Hb_000015_150 Hb_002463_050--Hb_000015_150 Hb_000061_310 Hb_000061_310 Hb_002463_050--Hb_000061_310 Hb_000654_050 Hb_000654_050 Hb_002463_050--Hb_000654_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.72185 8.83627 26.9966 14.9067 0.858595 1.53428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.122809 0.0644216 0 3.39963 2.49082

CAGE analysis