Hb_007545_110

Information

Type -
Description -
Location Contig7545: 54625-58744
Sequence    

Annotation

kegg
ID rcu:RCOM_0845190
description catalytic, putative
nr
ID XP_002530948.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q6DBG8
description Probable arabinosyltransferase ARAD1 OS=Arabidopsis thaliana GN=ARAD1 PE=1 SV=1
trembl
ID B9SY79
description Catalytic, putative OS=Ricinus communis GN=RCOM_0845190 PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable arabinosyltransferase arad1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56990: 56200-56377 , PASA_asmbl_56992: 57747-58123 , PASA_asmbl_56995: 59710-68065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007545_110 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_038044_010 0.1055797382 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
3 Hb_022092_040 0.1176766611 - - PREDICTED: serine/arginine repetitive matrix protein 1 [Jatropha curcas]
4 Hb_000260_610 0.1273478104 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
5 Hb_024973_020 0.1274489494 - - Protein regulator of cytokinesis, putative [Ricinus communis]
6 Hb_000032_200 0.1333531861 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
7 Hb_176472_020 0.1392249766 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001501_070 0.1413182159 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
9 Hb_001761_010 0.1415924404 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
10 Hb_002400_050 0.1426616595 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
11 Hb_004846_230 0.1430052578 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
12 Hb_000347_140 0.1454624003 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_007123_080 0.1487255799 - - big map kinase/bmk, putative [Ricinus communis]
14 Hb_000288_090 0.149430139 - - unnamed protein product [Vitis vinifera]
15 Hb_000890_020 0.151222633 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
16 Hb_000020_080 0.1526945095 transcription factor TF Family: MYB hypothetical protein JCGZ_09080 [Jatropha curcas]
17 Hb_008173_060 0.1566662597 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
18 Hb_002540_070 0.1586656484 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
19 Hb_000365_210 0.1588007453 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
20 Hb_002942_120 0.1590982224 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]

Gene co-expression network

sample Hb_007545_110 Hb_007545_110 Hb_038044_010 Hb_038044_010 Hb_007545_110--Hb_038044_010 Hb_022092_040 Hb_022092_040 Hb_007545_110--Hb_022092_040 Hb_000260_610 Hb_000260_610 Hb_007545_110--Hb_000260_610 Hb_024973_020 Hb_024973_020 Hb_007545_110--Hb_024973_020 Hb_000032_200 Hb_000032_200 Hb_007545_110--Hb_000032_200 Hb_176472_020 Hb_176472_020 Hb_007545_110--Hb_176472_020 Hb_001501_070 Hb_001501_070 Hb_038044_010--Hb_001501_070 Hb_029510_130 Hb_029510_130 Hb_038044_010--Hb_029510_130 Hb_038044_010--Hb_024973_020 Hb_001478_020 Hb_001478_020 Hb_038044_010--Hb_001478_020 Hb_002942_120 Hb_002942_120 Hb_038044_010--Hb_002942_120 Hb_000960_120 Hb_000960_120 Hb_022092_040--Hb_000960_120 Hb_001761_010 Hb_001761_010 Hb_022092_040--Hb_001761_010 Hb_028487_120 Hb_028487_120 Hb_022092_040--Hb_028487_120 Hb_022092_040--Hb_000260_610 Hb_002218_050 Hb_002218_050 Hb_022092_040--Hb_002218_050 Hb_013344_010 Hb_013344_010 Hb_000260_610--Hb_013344_010 Hb_006060_010 Hb_006060_010 Hb_000260_610--Hb_006060_010 Hb_002400_050 Hb_002400_050 Hb_000260_610--Hb_002400_050 Hb_003667_020 Hb_003667_020 Hb_000260_610--Hb_003667_020 Hb_004920_050 Hb_004920_050 Hb_000260_610--Hb_004920_050 Hb_012653_010 Hb_012653_010 Hb_024973_020--Hb_012653_010 Hb_004218_050 Hb_004218_050 Hb_024973_020--Hb_004218_050 Hb_024973_020--Hb_001501_070 Hb_008406_100 Hb_008406_100 Hb_024973_020--Hb_008406_100 Hb_024973_020--Hb_001761_010 Hb_001141_050 Hb_001141_050 Hb_000032_200--Hb_001141_050 Hb_003106_200 Hb_003106_200 Hb_000032_200--Hb_003106_200 Hb_003430_040 Hb_003430_040 Hb_000032_200--Hb_003430_040 Hb_000347_140 Hb_000347_140 Hb_000032_200--Hb_000347_140 Hb_012787_030 Hb_012787_030 Hb_000032_200--Hb_012787_030 Hb_000732_030 Hb_000732_030 Hb_000032_200--Hb_000732_030 Hb_002218_100 Hb_002218_100 Hb_176472_020--Hb_002218_100 Hb_002217_190 Hb_002217_190 Hb_176472_020--Hb_002217_190 Hb_004449_140 Hb_004449_140 Hb_176472_020--Hb_004449_140 Hb_006775_070 Hb_006775_070 Hb_176472_020--Hb_006775_070 Hb_008173_060 Hb_008173_060 Hb_176472_020--Hb_008173_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.757405 3.33348 18.5901 4.70129 0.637857 0.410499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.679861 0.713218 0.674347 1.79887 1.71138

CAGE analysis