Hb_000032_200

Information

Type -
Description -
Location Contig32: 168969-176369
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa005818mg
description hypothetical protein
nr
ID XP_012086739.1
description PREDICTED: probable polygalacturonase [Jatropha curcas]
swissprot
ID A7PZL3
description Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1
trembl
ID A0A067K0I9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20465 PE=3 SV=1
Gene Ontology
ID GO:0004650
description probable polygalacturonase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33703: 169002-176210 , PASA_asmbl_33705: 175929-176347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_200 0.0 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
2 Hb_001141_050 0.1044208842 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
3 Hb_003106_200 0.1082188122 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
4 Hb_003430_040 0.1192850621 - - spermidine synthase 1, putative [Ricinus communis]
5 Hb_000347_140 0.1244558683 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_012787_030 0.1303676422 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
7 Hb_000732_030 0.1312748339 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007545_110 0.1333531861 - - catalytic, putative [Ricinus communis]
9 Hb_006935_040 0.1357558307 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
10 Hb_001922_110 0.1406131444 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004163_030 0.1425711241 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
12 Hb_001123_110 0.1426309682 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000008_390 0.1433883592 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
14 Hb_000928_250 0.143528486 - - calcium ion binding protein, putative [Ricinus communis]
15 Hb_004517_030 0.1447229528 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002942_120 0.1469230084 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
17 Hb_007123_080 0.1477167676 - - big map kinase/bmk, putative [Ricinus communis]
18 Hb_001198_080 0.1484504497 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
19 Hb_003549_130 0.1498158997 - - neutral/alkaline invertase [Manihot esculenta]
20 Hb_003874_010 0.1500813864 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000032_200 Hb_000032_200 Hb_001141_050 Hb_001141_050 Hb_000032_200--Hb_001141_050 Hb_003106_200 Hb_003106_200 Hb_000032_200--Hb_003106_200 Hb_003430_040 Hb_003430_040 Hb_000032_200--Hb_003430_040 Hb_000347_140 Hb_000347_140 Hb_000032_200--Hb_000347_140 Hb_012787_030 Hb_012787_030 Hb_000032_200--Hb_012787_030 Hb_000732_030 Hb_000732_030 Hb_000032_200--Hb_000732_030 Hb_001922_110 Hb_001922_110 Hb_001141_050--Hb_001922_110 Hb_000032_410 Hb_000032_410 Hb_001141_050--Hb_000032_410 Hb_006133_020 Hb_006133_020 Hb_001141_050--Hb_006133_020 Hb_000076_250 Hb_000076_250 Hb_001141_050--Hb_000076_250 Hb_003640_050 Hb_003640_050 Hb_001141_050--Hb_003640_050 Hb_000928_250 Hb_000928_250 Hb_003106_200--Hb_000928_250 Hb_015026_020 Hb_015026_020 Hb_003106_200--Hb_015026_020 Hb_000818_120 Hb_000818_120 Hb_003106_200--Hb_000818_120 Hb_002249_170 Hb_002249_170 Hb_003106_200--Hb_002249_170 Hb_001198_080 Hb_001198_080 Hb_003106_200--Hb_001198_080 Hb_074792_010 Hb_074792_010 Hb_003430_040--Hb_074792_010 Hb_003430_040--Hb_000347_140 Hb_003874_010 Hb_003874_010 Hb_003430_040--Hb_003874_010 Hb_003430_040--Hb_000732_030 Hb_000300_710 Hb_000300_710 Hb_003430_040--Hb_000300_710 Hb_000347_140--Hb_074792_010 Hb_000347_140--Hb_000300_710 Hb_188739_010 Hb_188739_010 Hb_000347_140--Hb_188739_010 Hb_000638_260 Hb_000638_260 Hb_000347_140--Hb_000638_260 Hb_012787_030--Hb_015026_020 Hb_001894_160 Hb_001894_160 Hb_012787_030--Hb_001894_160 Hb_012787_030--Hb_000928_250 Hb_012787_030--Hb_003106_200 Hb_003747_050 Hb_003747_050 Hb_012787_030--Hb_003747_050 Hb_011671_110 Hb_011671_110 Hb_012787_030--Hb_011671_110 Hb_000959_190 Hb_000959_190 Hb_000732_030--Hb_000959_190 Hb_000732_030--Hb_074792_010 Hb_003529_180 Hb_003529_180 Hb_000732_030--Hb_003529_180 Hb_001135_110 Hb_001135_110 Hb_000732_030--Hb_001135_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.26091 12.2666 58.5865 16.8327 2.64092 3.37342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.91166 2.23325 3.1274 4.13833 12.91

CAGE analysis