Hb_000732_030

Information

Type -
Description -
Location Contig732: 7692-10142
Sequence    

Annotation

kegg
ID rcu:RCOM_1096760
description hypothetical protein
nr
ID XP_002524713.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M815
description Protein PLANT CADMIUM RESISTANCE 8 OS=Arabidopsis thaliana GN=PCR8 PE=1 SV=2
trembl
ID B9SFE4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1096760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56110: 7606-10294
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000732_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000959_190 0.1089973228 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
3 Hb_003430_040 0.1102173187 - - spermidine synthase 1, putative [Ricinus communis]
4 Hb_074792_010 0.1111779299 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
5 Hb_003529_180 0.1143360664 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
6 Hb_001135_110 0.1224465752 - - -
7 Hb_000032_200 0.1312748339 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
8 Hb_012787_030 0.1317805552 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
9 Hb_003874_010 0.1323252276 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
10 Hb_000300_710 0.1355763641 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
11 Hb_004957_020 0.1390216964 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002600_130 0.1435261351 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
13 Hb_001214_190 0.1486650747 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
14 Hb_001123_110 0.1510380465 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000347_140 0.153350172 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_000120_350 0.1540043676 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
17 Hb_003747_050 0.1541580633 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
18 Hb_000803_090 0.1551304129 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
19 Hb_002400_050 0.1632327206 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
20 Hb_000008_390 0.1648368294 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]

Gene co-expression network

sample Hb_000732_030 Hb_000732_030 Hb_000959_190 Hb_000959_190 Hb_000732_030--Hb_000959_190 Hb_003430_040 Hb_003430_040 Hb_000732_030--Hb_003430_040 Hb_074792_010 Hb_074792_010 Hb_000732_030--Hb_074792_010 Hb_003529_180 Hb_003529_180 Hb_000732_030--Hb_003529_180 Hb_001135_110 Hb_001135_110 Hb_000732_030--Hb_001135_110 Hb_000032_200 Hb_000032_200 Hb_000732_030--Hb_000032_200 Hb_001123_110 Hb_001123_110 Hb_000959_190--Hb_001123_110 Hb_000120_350 Hb_000120_350 Hb_000959_190--Hb_000120_350 Hb_000008_390 Hb_000008_390 Hb_000959_190--Hb_000008_390 Hb_000640_050 Hb_000640_050 Hb_000959_190--Hb_000640_050 Hb_004957_020 Hb_004957_020 Hb_000959_190--Hb_004957_020 Hb_003430_040--Hb_074792_010 Hb_000347_140 Hb_000347_140 Hb_003430_040--Hb_000347_140 Hb_003874_010 Hb_003874_010 Hb_003430_040--Hb_003874_010 Hb_003430_040--Hb_000032_200 Hb_000300_710 Hb_000300_710 Hb_003430_040--Hb_000300_710 Hb_074792_010--Hb_000300_710 Hb_074792_010--Hb_000347_140 Hb_000638_260 Hb_000638_260 Hb_074792_010--Hb_000638_260 Hb_074792_010--Hb_003874_010 Hb_002600_130 Hb_002600_130 Hb_003529_180--Hb_002600_130 Hb_011609_010 Hb_011609_010 Hb_003529_180--Hb_011609_010 Hb_004725_030 Hb_004725_030 Hb_003529_180--Hb_004725_030 Hb_000009_220 Hb_000009_220 Hb_003529_180--Hb_000009_220 Hb_000189_390 Hb_000189_390 Hb_003529_180--Hb_000189_390 Hb_002498_240 Hb_002498_240 Hb_001135_110--Hb_002498_240 Hb_001135_110--Hb_000959_190 Hb_001135_110--Hb_001123_110 Hb_013834_010 Hb_013834_010 Hb_001135_110--Hb_013834_010 Hb_003747_050 Hb_003747_050 Hb_001135_110--Hb_003747_050 Hb_001141_050 Hb_001141_050 Hb_000032_200--Hb_001141_050 Hb_003106_200 Hb_003106_200 Hb_000032_200--Hb_003106_200 Hb_000032_200--Hb_000347_140 Hb_012787_030 Hb_012787_030 Hb_000032_200--Hb_012787_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.53927 10.0825 46.0535 13.7728 3.44328 6.45117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.89332 2.60057 2.84868 2.46523 5.13299

CAGE analysis