Hb_013834_010

Information

Type -
Description -
Location Contig13834: 21094-27096
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13890g
description TETRASPORE family protein
nr
ID XP_012077129.1
description PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
swissprot
ID Q8S949
description Kinesin-like protein NACK2 OS=Nicotiana tabacum GN=NACK2 PE=1 SV=1
trembl
ID A0A067KCW0
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_07548 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein nack2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10528: 21184-22759 , PASA_asmbl_10530: 23135-25814 , PASA_asmbl_10531: 25948-27595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013834_010 0.0 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
2 Hb_002400_050 0.1476325402 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
3 Hb_001135_110 0.1500804647 - - -
4 Hb_000959_190 0.1524648017 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
5 Hb_004920_050 0.1562234314 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
6 Hb_013344_010 0.1567706994 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
7 Hb_000732_030 0.1663047926 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000320_050 0.1726177215 - - bcr-associated protein, bap, putative [Ricinus communis]
9 Hb_000890_020 0.1729101894 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
10 Hb_002518_200 0.1738783932 - - Proliferating cell nuclear antigen [Theobroma cacao]
11 Hb_000668_060 0.1780267125 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
12 Hb_000692_210 0.1789956028 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
13 Hb_002498_240 0.1790859196 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
14 Hb_000260_610 0.1794308774 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
15 Hb_000003_740 0.1811925087 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
16 Hb_000134_030 0.1826853586 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
17 Hb_011609_040 0.1865587073 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
18 Hb_004957_020 0.1895341391 - - conserved hypothetical protein [Ricinus communis]
19 Hb_071781_010 0.1905282584 - - hypothetical protein POPTR_0010s13190g [Populus trichocarpa]
20 Hb_126648_010 0.1910464861 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_013834_010 Hb_013834_010 Hb_002400_050 Hb_002400_050 Hb_013834_010--Hb_002400_050 Hb_001135_110 Hb_001135_110 Hb_013834_010--Hb_001135_110 Hb_000959_190 Hb_000959_190 Hb_013834_010--Hb_000959_190 Hb_004920_050 Hb_004920_050 Hb_013834_010--Hb_004920_050 Hb_013344_010 Hb_013344_010 Hb_013834_010--Hb_013344_010 Hb_000732_030 Hb_000732_030 Hb_013834_010--Hb_000732_030 Hb_000890_020 Hb_000890_020 Hb_002400_050--Hb_000890_020 Hb_000134_030 Hb_000134_030 Hb_002400_050--Hb_000134_030 Hb_000260_610 Hb_000260_610 Hb_002400_050--Hb_000260_610 Hb_007545_110 Hb_007545_110 Hb_002400_050--Hb_007545_110 Hb_002518_200 Hb_002518_200 Hb_002400_050--Hb_002518_200 Hb_000181_270 Hb_000181_270 Hb_002400_050--Hb_000181_270 Hb_001135_110--Hb_000732_030 Hb_002498_240 Hb_002498_240 Hb_001135_110--Hb_002498_240 Hb_001135_110--Hb_000959_190 Hb_001123_110 Hb_001123_110 Hb_001135_110--Hb_001123_110 Hb_003747_050 Hb_003747_050 Hb_001135_110--Hb_003747_050 Hb_000959_190--Hb_000732_030 Hb_000959_190--Hb_001123_110 Hb_000120_350 Hb_000120_350 Hb_000959_190--Hb_000120_350 Hb_000008_390 Hb_000008_390 Hb_000959_190--Hb_000008_390 Hb_000640_050 Hb_000640_050 Hb_000959_190--Hb_000640_050 Hb_004957_020 Hb_004957_020 Hb_000959_190--Hb_004957_020 Hb_004920_050--Hb_000181_270 Hb_011485_030 Hb_011485_030 Hb_004920_050--Hb_011485_030 Hb_000077_110 Hb_000077_110 Hb_004920_050--Hb_000077_110 Hb_004920_050--Hb_000890_020 Hb_004920_050--Hb_002518_200 Hb_000566_130 Hb_000566_130 Hb_004920_050--Hb_000566_130 Hb_000960_120 Hb_000960_120 Hb_013344_010--Hb_000960_120 Hb_013344_010--Hb_000260_610 Hb_006060_010 Hb_006060_010 Hb_013344_010--Hb_006060_010 Hb_001329_010 Hb_001329_010 Hb_013344_010--Hb_001329_010 Hb_000656_320 Hb_000656_320 Hb_013344_010--Hb_000656_320 Hb_008406_100 Hb_008406_100 Hb_013344_010--Hb_008406_100 Hb_003430_040 Hb_003430_040 Hb_000732_030--Hb_003430_040 Hb_074792_010 Hb_074792_010 Hb_000732_030--Hb_074792_010 Hb_003529_180 Hb_003529_180 Hb_000732_030--Hb_003529_180 Hb_000032_200 Hb_000032_200 Hb_000732_030--Hb_000032_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2712 1.49502 8.31145 4.36423 0.836795 1.54286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.552564 0.350272 0.0692514 1.06385 0.411913

CAGE analysis