Hb_004957_020

Information

Type -
Description -
Location Contig4957: 11069-17524
Sequence    

Annotation

kegg
ID rcu:RCOM_0843010
description hypothetical protein
nr
ID XP_002526016.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GYX9
description Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=1 SV=1
trembl
ID B9SJ47
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0843010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45449: 10995-17656 , PASA_asmbl_45450: 14486-14737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004957_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005901_030 0.1075855959 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
3 Hb_000959_190 0.1197505214 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
4 Hb_003430_040 0.1233110798 - - spermidine synthase 1, putative [Ricinus communis]
5 Hb_003874_010 0.1292413928 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
6 Hb_000211_100 0.1312625883 - - PREDICTED: biotin synthase [Jatropha curcas]
7 Hb_000345_290 0.1374098098 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000732_030 0.1390216964 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000640_050 0.1414578557 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
10 Hb_000008_390 0.1458473375 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
11 Hb_010080_010 0.1479956396 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
12 Hb_002600_130 0.1490867288 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
13 Hb_000940_050 0.1504401423 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
14 Hb_000803_090 0.1513821618 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
15 Hb_000086_180 0.1536771851 - - hypothetical protein JCGZ_17674 [Jatropha curcas]
16 Hb_074792_010 0.1549496747 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
17 Hb_007123_080 0.1549551113 - - big map kinase/bmk, putative [Ricinus communis]
18 Hb_030131_020 0.1554415463 - - Carboxypeptidase B2 precursor, putative [Ricinus communis]
19 Hb_001214_190 0.1555272545 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
20 Hb_000009_610 0.1562241007 - - PREDICTED: uncharacterized protein LOC105639638 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004957_020 Hb_004957_020 Hb_005901_030 Hb_005901_030 Hb_004957_020--Hb_005901_030 Hb_000959_190 Hb_000959_190 Hb_004957_020--Hb_000959_190 Hb_003430_040 Hb_003430_040 Hb_004957_020--Hb_003430_040 Hb_003874_010 Hb_003874_010 Hb_004957_020--Hb_003874_010 Hb_000211_100 Hb_000211_100 Hb_004957_020--Hb_000211_100 Hb_000345_290 Hb_000345_290 Hb_004957_020--Hb_000345_290 Hb_004155_020 Hb_004155_020 Hb_005901_030--Hb_004155_020 Hb_000260_650 Hb_000260_650 Hb_005901_030--Hb_000260_650 Hb_005901_030--Hb_000211_100 Hb_021495_010 Hb_021495_010 Hb_005901_030--Hb_021495_010 Hb_000640_050 Hb_000640_050 Hb_005901_030--Hb_000640_050 Hb_000732_030 Hb_000732_030 Hb_000959_190--Hb_000732_030 Hb_001123_110 Hb_001123_110 Hb_000959_190--Hb_001123_110 Hb_000120_350 Hb_000120_350 Hb_000959_190--Hb_000120_350 Hb_000008_390 Hb_000008_390 Hb_000959_190--Hb_000008_390 Hb_000959_190--Hb_000640_050 Hb_074792_010 Hb_074792_010 Hb_003430_040--Hb_074792_010 Hb_000347_140 Hb_000347_140 Hb_003430_040--Hb_000347_140 Hb_003430_040--Hb_003874_010 Hb_003430_040--Hb_000732_030 Hb_000032_200 Hb_000032_200 Hb_003430_040--Hb_000032_200 Hb_000300_710 Hb_000300_710 Hb_003430_040--Hb_000300_710 Hb_000392_450 Hb_000392_450 Hb_003874_010--Hb_000392_450 Hb_002027_320 Hb_002027_320 Hb_003874_010--Hb_002027_320 Hb_007263_010 Hb_007263_010 Hb_003874_010--Hb_007263_010 Hb_004517_030 Hb_004517_030 Hb_003874_010--Hb_004517_030 Hb_003874_010--Hb_000300_710 Hb_011386_050 Hb_011386_050 Hb_000211_100--Hb_011386_050 Hb_005784_070 Hb_005784_070 Hb_000211_100--Hb_005784_070 Hb_010080_010 Hb_010080_010 Hb_000211_100--Hb_010080_010 Hb_000098_150 Hb_000098_150 Hb_000211_100--Hb_000098_150 Hb_001369_030 Hb_001369_030 Hb_000345_290--Hb_001369_030 Hb_000062_360 Hb_000062_360 Hb_000345_290--Hb_000062_360 Hb_000212_300 Hb_000212_300 Hb_000345_290--Hb_000212_300 Hb_001322_020 Hb_001322_020 Hb_000345_290--Hb_001322_020 Hb_006555_040 Hb_006555_040 Hb_000345_290--Hb_006555_040 Hb_029622_030 Hb_029622_030 Hb_000345_290--Hb_029622_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.5481 9.09896 52.8835 14.014 7.23182 8.3253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.5701 3.04395 5.22289 9.96082 6.86342

CAGE analysis