Hb_000120_350

Information

Type -
Description -
Location Contig120: 245018-245489
Sequence    

Annotation

kegg
ID egr:104422872
description uncharacterized LOC104422872
nr
ID XP_010033624.1
description PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059AHK4
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02573 PE=4 SV=1
Gene Ontology
ID GO:0009535
description PREDICTED: uncharacterized protein LOC104422872 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_350 0.0 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
2 Hb_000959_190 0.1164640786 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
3 Hb_001123_110 0.1290760914 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002151_010 0.1306284079 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
5 Hb_000123_140 0.1318865372 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
6 Hb_006935_040 0.133507956 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
7 Hb_000300_710 0.139145975 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
8 Hb_000008_390 0.1475757243 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
9 Hb_000390_020 0.1534159403 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
10 Hb_000732_030 0.1540043676 - - conserved hypothetical protein [Ricinus communis]
11 Hb_119583_020 0.1547446738 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
12 Hb_176472_020 0.1602867677 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000984_220 0.1617359015 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
14 Hb_001414_050 0.1626672727 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
15 Hb_002218_100 0.1628628557 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
16 Hb_000032_200 0.1632690235 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
17 Hb_030545_010 0.1657865737 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
18 Hb_000347_140 0.1658296076 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_074792_010 0.167363573 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
20 Hb_004158_050 0.1679586669 - - hypothetical protein JCGZ_09026 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_350 Hb_000120_350 Hb_000959_190 Hb_000959_190 Hb_000120_350--Hb_000959_190 Hb_001123_110 Hb_001123_110 Hb_000120_350--Hb_001123_110 Hb_002151_010 Hb_002151_010 Hb_000120_350--Hb_002151_010 Hb_000123_140 Hb_000123_140 Hb_000120_350--Hb_000123_140 Hb_006935_040 Hb_006935_040 Hb_000120_350--Hb_006935_040 Hb_000300_710 Hb_000300_710 Hb_000120_350--Hb_000300_710 Hb_000732_030 Hb_000732_030 Hb_000959_190--Hb_000732_030 Hb_000959_190--Hb_001123_110 Hb_000008_390 Hb_000008_390 Hb_000959_190--Hb_000008_390 Hb_000640_050 Hb_000640_050 Hb_000959_190--Hb_000640_050 Hb_004957_020 Hb_004957_020 Hb_000959_190--Hb_004957_020 Hb_119583_020 Hb_119583_020 Hb_001123_110--Hb_119583_020 Hb_002498_240 Hb_002498_240 Hb_001123_110--Hb_002498_240 Hb_005511_130 Hb_005511_130 Hb_001123_110--Hb_005511_130 Hb_000984_220 Hb_000984_220 Hb_001123_110--Hb_000984_220 Hb_001160_110 Hb_001160_110 Hb_001123_110--Hb_001160_110 Hb_004158_050 Hb_004158_050 Hb_002151_010--Hb_004158_050 Hb_002900_150 Hb_002900_150 Hb_002151_010--Hb_002900_150 Hb_004324_210 Hb_004324_210 Hb_002151_010--Hb_004324_210 Hb_004907_090 Hb_004907_090 Hb_002151_010--Hb_004907_090 Hb_002151_010--Hb_000984_220 Hb_000211_040 Hb_000211_040 Hb_000123_140--Hb_000211_040 Hb_000123_140--Hb_000959_190 Hb_001322_020 Hb_001322_020 Hb_000123_140--Hb_001322_020 Hb_155025_010 Hb_155025_010 Hb_000123_140--Hb_155025_010 Hb_000123_140--Hb_006935_040 Hb_000928_250 Hb_000928_250 Hb_006935_040--Hb_000928_250 Hb_001894_160 Hb_001894_160 Hb_006935_040--Hb_001894_160 Hb_006935_040--Hb_000008_390 Hb_015026_020 Hb_015026_020 Hb_006935_040--Hb_015026_020 Hb_003106_200 Hb_003106_200 Hb_006935_040--Hb_003106_200 Hb_001414_050 Hb_001414_050 Hb_006935_040--Hb_001414_050 Hb_074792_010 Hb_074792_010 Hb_000300_710--Hb_074792_010 Hb_000347_140 Hb_000347_140 Hb_000300_710--Hb_000347_140 Hb_003874_010 Hb_003874_010 Hb_000300_710--Hb_003874_010 Hb_003430_040 Hb_003430_040 Hb_000300_710--Hb_003430_040 Hb_188739_010 Hb_188739_010 Hb_000300_710--Hb_188739_010 Hb_000424_070 Hb_000424_070 Hb_000300_710--Hb_000424_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9958 33.2606 130.624 53.9884 18.7647 15.3985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.24869 18.2386 3.41827 5.17082 24.2788

CAGE analysis