Hb_004907_090

Information

Type -
Description -
Location Contig4907: 130618-135922
Sequence    

Annotation

kegg
ID rcu:RCOM_1481420
description ATP binding protein, putative
nr
ID XP_002524217.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID O22285
description Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1
trembl
ID B9SDZ8
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1481420 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable methyltransferase pmt11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45297: 130578-134133 , PASA_asmbl_45298: 134137-134383 , PASA_asmbl_45299: 134450-136149
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004907_090 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_004052_180 0.0963430435 - - PREDICTED: protein COBRA-like [Jatropha curcas]
3 Hb_007594_080 0.097400989 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
4 Hb_004013_030 0.0981728418 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
5 Hb_006816_190 0.0999113974 - - calreticulin family protein [Populus trichocarpa]
6 Hb_000001_090 0.1032448435 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
7 Hb_002686_300 0.10586663 - - adenosine diphosphatase, putative [Ricinus communis]
8 Hb_005656_070 0.1105681576 - - PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_001279_090 0.1158677684 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
10 Hb_006588_160 0.1179555711 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_000645_070 0.1191906405 - - aldehyde dehydrogenase, putative [Ricinus communis]
12 Hb_000302_190 0.1192955965 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
13 Hb_003687_080 0.123397987 - - PREDICTED: casein kinase I-like [Jatropha curcas]
14 Hb_004324_210 0.1234754912 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
15 Hb_000866_070 0.125121356 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
16 Hb_002837_040 0.125232213 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
17 Hb_029584_120 0.1257394879 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
18 Hb_001053_080 0.1257408215 - - OsCesA3 protein [Morus notabilis]
19 Hb_002053_050 0.1276003658 - - Kinesin heavy chain, putative [Ricinus communis]
20 Hb_000968_060 0.1294036128 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]

Gene co-expression network

sample Hb_004907_090 Hb_004907_090 Hb_004052_180 Hb_004052_180 Hb_004907_090--Hb_004052_180 Hb_007594_080 Hb_007594_080 Hb_004907_090--Hb_007594_080 Hb_004013_030 Hb_004013_030 Hb_004907_090--Hb_004013_030 Hb_006816_190 Hb_006816_190 Hb_004907_090--Hb_006816_190 Hb_000001_090 Hb_000001_090 Hb_004907_090--Hb_000001_090 Hb_002686_300 Hb_002686_300 Hb_004907_090--Hb_002686_300 Hb_000562_100 Hb_000562_100 Hb_004052_180--Hb_000562_100 Hb_004052_180--Hb_000001_090 Hb_001053_080 Hb_001053_080 Hb_004052_180--Hb_001053_080 Hb_000959_300 Hb_000959_300 Hb_004052_180--Hb_000959_300 Hb_002488_010 Hb_002488_010 Hb_004052_180--Hb_002488_010 Hb_001279_020 Hb_001279_020 Hb_007594_080--Hb_001279_020 Hb_010620_050 Hb_010620_050 Hb_007594_080--Hb_010620_050 Hb_001663_130 Hb_001663_130 Hb_007594_080--Hb_001663_130 Hb_000302_190 Hb_000302_190 Hb_007594_080--Hb_000302_190 Hb_000529_130 Hb_000529_130 Hb_007594_080--Hb_000529_130 Hb_001689_050 Hb_001689_050 Hb_007594_080--Hb_001689_050 Hb_006588_160 Hb_006588_160 Hb_004013_030--Hb_006588_160 Hb_000154_050 Hb_000154_050 Hb_004013_030--Hb_000154_050 Hb_004013_030--Hb_006816_190 Hb_001450_020 Hb_001450_020 Hb_004013_030--Hb_001450_020 Hb_000331_140 Hb_000331_140 Hb_004013_030--Hb_000331_140 Hb_074399_010 Hb_074399_010 Hb_004013_030--Hb_074399_010 Hb_001623_490 Hb_001623_490 Hb_006816_190--Hb_001623_490 Hb_000645_180 Hb_000645_180 Hb_006816_190--Hb_000645_180 Hb_000645_070 Hb_000645_070 Hb_006816_190--Hb_000645_070 Hb_003687_080 Hb_003687_080 Hb_006816_190--Hb_003687_080 Hb_000866_070 Hb_000866_070 Hb_000001_090--Hb_000866_070 Hb_029584_120 Hb_029584_120 Hb_000001_090--Hb_029584_120 Hb_000001_090--Hb_006588_160 Hb_002942_230 Hb_002942_230 Hb_000001_090--Hb_002942_230 Hb_000001_090--Hb_003687_080 Hb_000001_090--Hb_074399_010 Hb_002686_300--Hb_003687_080 Hb_006846_170 Hb_006846_170 Hb_002686_300--Hb_006846_170 Hb_000260_490 Hb_000260_490 Hb_002686_300--Hb_000260_490 Hb_002686_300--Hb_004013_030 Hb_002249_020 Hb_002249_020 Hb_002686_300--Hb_002249_020 Hb_003228_100 Hb_003228_100 Hb_002686_300--Hb_003228_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.257 4.68449 17.8956 13.6824 8.15032 4.55287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.89339 1.69682 2.15683 2.82657 11.6433

CAGE analysis