Hb_004052_180

Information

Type -
Description -
Location Contig4052: 187115-190798
Sequence    

Annotation

kegg
ID pop:POPTR_0015s07100g
description phytochelatin synthetase family protein
nr
ID XP_012080414.1
description PREDICTED: protein COBRA-like [Jatropha curcas]
swissprot
ID Q94KT8
description Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1
trembl
ID A0A067K8N5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11749 PE=4 SV=1
Gene Ontology
ID GO:0009505
description protein cobra-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40200: 187121-190780 , PASA_asmbl_40201: 187160-190777
cDNA
(Sanger)
(ID:Location)		 032_E03.ab1: 187121-189452 , 052_I14.ab1: 187119-188843

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004052_180 0.0 - - PREDICTED: protein COBRA-like [Jatropha curcas]
2 Hb_004907_090 0.0963430435 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000562_100 0.1085099216 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
4 Hb_000001_090 0.112261002 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
5 Hb_001053_080 0.1132429727 - - OsCesA3 protein [Morus notabilis]
6 Hb_000959_300 0.1155299152 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
7 Hb_002488_010 0.1205604755 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
8 Hb_000866_070 0.1225438377 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
9 Hb_000968_060 0.1292569673 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
10 Hb_029584_120 0.1304789682 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
11 Hb_012353_040 0.1318607526 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
12 Hb_006588_160 0.1318738276 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_000645_070 0.1321557453 - - aldehyde dehydrogenase, putative [Ricinus communis]
14 Hb_001279_090 0.1322053083 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
15 Hb_050847_040 0.1360145706 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
16 Hb_007594_080 0.1389164765 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
17 Hb_001140_180 0.1417360233 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
18 Hb_002837_040 0.1421986267 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
19 Hb_000808_210 0.1438582099 - - hypothetical protein EUTSA_v10023481mg [Eutrema salsugineum]
20 Hb_000302_190 0.1459441244 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]

Gene co-expression network

sample Hb_004052_180 Hb_004052_180 Hb_004907_090 Hb_004907_090 Hb_004052_180--Hb_004907_090 Hb_000562_100 Hb_000562_100 Hb_004052_180--Hb_000562_100 Hb_000001_090 Hb_000001_090 Hb_004052_180--Hb_000001_090 Hb_001053_080 Hb_001053_080 Hb_004052_180--Hb_001053_080 Hb_000959_300 Hb_000959_300 Hb_004052_180--Hb_000959_300 Hb_002488_010 Hb_002488_010 Hb_004052_180--Hb_002488_010 Hb_007594_080 Hb_007594_080 Hb_004907_090--Hb_007594_080 Hb_004013_030 Hb_004013_030 Hb_004907_090--Hb_004013_030 Hb_006816_190 Hb_006816_190 Hb_004907_090--Hb_006816_190 Hb_004907_090--Hb_000001_090 Hb_002686_300 Hb_002686_300 Hb_004907_090--Hb_002686_300 Hb_012353_040 Hb_012353_040 Hb_000562_100--Hb_012353_040 Hb_000997_070 Hb_000997_070 Hb_000562_100--Hb_000997_070 Hb_003849_120 Hb_003849_120 Hb_000562_100--Hb_003849_120 Hb_000012_400 Hb_000012_400 Hb_000562_100--Hb_000012_400 Hb_000866_070 Hb_000866_070 Hb_000562_100--Hb_000866_070 Hb_000001_090--Hb_000866_070 Hb_029584_120 Hb_029584_120 Hb_000001_090--Hb_029584_120 Hb_006588_160 Hb_006588_160 Hb_000001_090--Hb_006588_160 Hb_002942_230 Hb_002942_230 Hb_000001_090--Hb_002942_230 Hb_003687_080 Hb_003687_080 Hb_000001_090--Hb_003687_080 Hb_074399_010 Hb_074399_010 Hb_000001_090--Hb_074399_010 Hb_001279_090 Hb_001279_090 Hb_001053_080--Hb_001279_090 Hb_001279_020 Hb_001279_020 Hb_001053_080--Hb_001279_020 Hb_001053_080--Hb_006588_160 Hb_001140_180 Hb_001140_180 Hb_001053_080--Hb_001140_180 Hb_001053_080--Hb_000001_090 Hb_000358_210 Hb_000358_210 Hb_001053_080--Hb_000358_210 Hb_000959_300--Hb_002488_010 Hb_001411_130 Hb_001411_130 Hb_000959_300--Hb_001411_130 Hb_001969_140 Hb_001969_140 Hb_000959_300--Hb_001969_140 Hb_000959_300--Hb_002942_230 Hb_003847_040 Hb_003847_040 Hb_000959_300--Hb_003847_040 Hb_000167_040 Hb_000167_040 Hb_000959_300--Hb_000167_040 Hb_000968_060 Hb_000968_060 Hb_002488_010--Hb_000968_060 Hb_002488_010--Hb_000866_070 Hb_012762_060 Hb_012762_060 Hb_002488_010--Hb_012762_060 Hb_003680_030 Hb_003680_030 Hb_002488_010--Hb_003680_030 Hb_002900_150 Hb_002900_150 Hb_002488_010--Hb_002900_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.813 36.8597 138.474 141.243 76.1054 32.8632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0283 5.97133 10.8455 44.2555 108.133

CAGE analysis