Hb_012353_040

Information

Type -
Description -
Location Contig12353: 36488-41179
Sequence    

Annotation

kegg
ID rcu:RCOM_0771530
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_002530371.1
description Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
swissprot
ID Q93Z08
description Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2
trembl
ID B9SWK2
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0771530 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo- -beta-glucosidase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07186: 36415-36665
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012353_040 0.0 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
2 Hb_000562_100 0.0788629838 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
3 Hb_005772_030 0.0982665648 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
4 Hb_000997_070 0.1210377052 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
5 Hb_003849_120 0.1220138387 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
6 Hb_004204_210 0.1244308674 - - PREDICTED: heparanase-like protein 1 [Jatropha curcas]
7 Hb_000866_070 0.1260706396 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
8 Hb_000984_140 0.1307211421 - - PREDICTED: xylulose kinase [Jatropha curcas]
9 Hb_004052_180 0.1318607526 - - PREDICTED: protein COBRA-like [Jatropha curcas]
10 Hb_001140_180 0.1350471362 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
11 Hb_001053_080 0.137900882 - - OsCesA3 protein [Morus notabilis]
12 Hb_000205_280 0.1394775859 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
13 Hb_004746_010 0.1438298003 - - aldo/keto reductase, putative [Ricinus communis]
14 Hb_000001_090 0.1462088056 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
15 Hb_003470_070 0.147403478 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
16 Hb_000968_060 0.1503667696 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
17 Hb_103688_010 0.1519704323 - - PREDICTED: sucrose-phosphatase 2-like [Jatropha curcas]
18 Hb_133230_010 0.152424108 - - hypothetical protein L484_001846 [Morus notabilis]
19 Hb_000012_400 0.1534873405 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
20 Hb_001004_120 0.1535336033 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012353_040 Hb_012353_040 Hb_000562_100 Hb_000562_100 Hb_012353_040--Hb_000562_100 Hb_005772_030 Hb_005772_030 Hb_012353_040--Hb_005772_030 Hb_000997_070 Hb_000997_070 Hb_012353_040--Hb_000997_070 Hb_003849_120 Hb_003849_120 Hb_012353_040--Hb_003849_120 Hb_004204_210 Hb_004204_210 Hb_012353_040--Hb_004204_210 Hb_000866_070 Hb_000866_070 Hb_012353_040--Hb_000866_070 Hb_000562_100--Hb_000997_070 Hb_000562_100--Hb_003849_120 Hb_000012_400 Hb_000012_400 Hb_000562_100--Hb_000012_400 Hb_004052_180 Hb_004052_180 Hb_000562_100--Hb_004052_180 Hb_000562_100--Hb_000866_070 Hb_000984_140 Hb_000984_140 Hb_005772_030--Hb_000984_140 Hb_002809_160 Hb_002809_160 Hb_005772_030--Hb_002809_160 Hb_005772_030--Hb_004204_210 Hb_002025_270 Hb_002025_270 Hb_005772_030--Hb_002025_270 Hb_009078_020 Hb_009078_020 Hb_005772_030--Hb_009078_020 Hb_000167_040 Hb_000167_040 Hb_000997_070--Hb_000167_040 Hb_001195_310 Hb_001195_310 Hb_000997_070--Hb_001195_310 Hb_010381_020 Hb_010381_020 Hb_000997_070--Hb_010381_020 Hb_001969_140 Hb_001969_140 Hb_000997_070--Hb_001969_140 Hb_000418_020 Hb_000418_020 Hb_000997_070--Hb_000418_020 Hb_003849_120--Hb_000012_400 Hb_003849_120--Hb_000997_070 Hb_002217_080 Hb_002217_080 Hb_003849_120--Hb_002217_080 Hb_000968_060 Hb_000968_060 Hb_003849_120--Hb_000968_060 Hb_003849_120--Hb_009078_020 Hb_004204_210--Hb_000984_140 Hb_003470_070 Hb_003470_070 Hb_004204_210--Hb_003470_070 Hb_004746_010 Hb_004746_010 Hb_004204_210--Hb_004746_010 Hb_001140_180 Hb_001140_180 Hb_004204_210--Hb_001140_180 Hb_005701_090 Hb_005701_090 Hb_004204_210--Hb_005701_090 Hb_000001_090 Hb_000001_090 Hb_000866_070--Hb_000001_090 Hb_002942_230 Hb_002942_230 Hb_000866_070--Hb_002942_230 Hb_029584_120 Hb_029584_120 Hb_000866_070--Hb_029584_120 Hb_000866_070--Hb_000968_060 Hb_001411_130 Hb_001411_130 Hb_000866_070--Hb_001411_130 Hb_000866_070--Hb_002217_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.84646 4.86409 7.74876 9.64627 5.49371 4.09203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13093 0.46272 0.303721 4.79352 6.54399

CAGE analysis