Hb_003470_070

Information

Type -
Description -
Location Contig3470: 61974-66541
Sequence    

Annotation

kegg
ID rcu:RCOM_0342910
description rubisco subunit binding-protein beta subunit, rubb, putative
nr
ID XP_002523404.1
description rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
swissprot
ID P21241
description RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1
trembl
ID B9SBN5
description Rubisco subunit binding-protein beta subunit, rubb, putative OS=Ricinus communis GN=RCOM_0342910 PE=3 SV=1
Gene Ontology
ID GO:0005737
description ru large subunit-binding protein subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36268: 61968-66553 , PASA_asmbl_36269: 65892-66553
cDNA
(Sanger)
(ID:Location)		 001_K17.ab1: 61973-64070 , 036_G24.ab1: 61968-64055

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003470_070 0.0 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
2 Hb_001427_210 0.0771392583 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
3 Hb_000562_070 0.0923777104 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
4 Hb_005181_040 0.102001873 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
5 Hb_001040_070 0.1044674848 - - PREDICTED: uncharacterized protein LOC105649523 [Jatropha curcas]
6 Hb_001411_030 0.107536649 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
7 Hb_001277_340 0.1078869167 - - aldo/keto reductase, putative [Ricinus communis]
8 Hb_001140_180 0.1115442149 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
9 Hb_004204_210 0.1116924808 - - PREDICTED: heparanase-like protein 1 [Jatropha curcas]
10 Hb_004225_040 0.1150740582 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
11 Hb_012262_040 0.1153648794 - - PREDICTED: uncharacterized protein LOC105633697 [Jatropha curcas]
12 Hb_000175_630 0.1159865667 - - PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Jatropha curcas]
13 Hb_000302_190 0.1176658956 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
14 Hb_005701_090 0.119940146 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000281_070 0.1225019121 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
16 Hb_029552_020 0.1228131196 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000224_220 0.1250808661 - - PREDICTED: protein disulfide isomerase-like 2-3 [Jatropha curcas]
18 Hb_000771_170 0.1274867141 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_002447_050 0.1288791688 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_003071_030 0.130007338 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003470_070 Hb_003470_070 Hb_001427_210 Hb_001427_210 Hb_003470_070--Hb_001427_210 Hb_000562_070 Hb_000562_070 Hb_003470_070--Hb_000562_070 Hb_005181_040 Hb_005181_040 Hb_003470_070--Hb_005181_040 Hb_001040_070 Hb_001040_070 Hb_003470_070--Hb_001040_070 Hb_001411_030 Hb_001411_030 Hb_003470_070--Hb_001411_030 Hb_001277_340 Hb_001277_340 Hb_003470_070--Hb_001277_340 Hb_012262_040 Hb_012262_040 Hb_001427_210--Hb_012262_040 Hb_000175_630 Hb_000175_630 Hb_001427_210--Hb_000175_630 Hb_001427_210--Hb_000562_070 Hb_000098_240 Hb_000098_240 Hb_001427_210--Hb_000098_240 Hb_020141_040 Hb_020141_040 Hb_001427_210--Hb_020141_040 Hb_000529_130 Hb_000529_130 Hb_000562_070--Hb_000529_130 Hb_000562_070--Hb_001277_340 Hb_001279_020 Hb_001279_020 Hb_000562_070--Hb_001279_020 Hb_029552_020 Hb_029552_020 Hb_000562_070--Hb_029552_020 Hb_005305_130 Hb_005305_130 Hb_000562_070--Hb_005305_130 Hb_000771_170 Hb_000771_170 Hb_000562_070--Hb_000771_170 Hb_000086_150 Hb_000086_150 Hb_005181_040--Hb_000086_150 Hb_005181_040--Hb_001040_070 Hb_000243_130 Hb_000243_130 Hb_005181_040--Hb_000243_130 Hb_009486_080 Hb_009486_080 Hb_005181_040--Hb_009486_080 Hb_002461_020 Hb_002461_020 Hb_005181_040--Hb_002461_020 Hb_000264_180 Hb_000264_180 Hb_001040_070--Hb_000264_180 Hb_000334_170 Hb_000334_170 Hb_001040_070--Hb_000334_170 Hb_004254_100 Hb_004254_100 Hb_001040_070--Hb_004254_100 Hb_005701_090 Hb_005701_090 Hb_001040_070--Hb_005701_090 Hb_004225_040 Hb_004225_040 Hb_001411_030--Hb_004225_040 Hb_119600_050 Hb_119600_050 Hb_001411_030--Hb_119600_050 Hb_022250_100 Hb_022250_100 Hb_001411_030--Hb_022250_100 Hb_005211_020 Hb_005211_020 Hb_001411_030--Hb_005211_020 Hb_001579_200 Hb_001579_200 Hb_001411_030--Hb_001579_200 Hb_002600_070 Hb_002600_070 Hb_001277_340--Hb_002600_070 Hb_009158_060 Hb_009158_060 Hb_001277_340--Hb_009158_060 Hb_001277_340--Hb_005305_130 Hb_000155_170 Hb_000155_170 Hb_001277_340--Hb_000155_170 Hb_003925_060 Hb_003925_060 Hb_001277_340--Hb_003925_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.1647 104.93 152.961 102.778 119.872 54.5528
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.8101 25.6523 16.2459 65.221 158.299

CAGE analysis