Hb_000264_180

Information

Type -
Description -
Location Contig264: 154241-158453
Sequence    

Annotation

kegg
ID gmx:100777318
description uncharacterized LOC100777318
nr
ID XP_003529317.1
description PREDICTED: uncharacterized protein LOC100777318 [Glycine max]
swissprot
ID -
description -
trembl
ID I1KLI6
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring finger protein 141

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27601: 156663-157055 , PASA_asmbl_27602: 154274-158310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_180 0.0 - - PREDICTED: uncharacterized protein LOC100777318 [Glycine max]
2 Hb_001040_070 0.1003208008 - - PREDICTED: uncharacterized protein LOC105649523 [Jatropha curcas]
3 Hb_000175_630 0.1069005093 - - PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Jatropha curcas]
4 Hb_006573_160 0.1171405178 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
5 Hb_003026_030 0.1199265494 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
6 Hb_044155_010 0.1247549919 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
7 Hb_001427_210 0.1250671684 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
8 Hb_003638_010 0.1258189146 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
9 Hb_000334_170 0.1268874113 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
10 Hb_000732_070 0.1273577179 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
11 Hb_002400_230 0.1275889602 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
12 Hb_000245_150 0.1286819127 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
13 Hb_005181_040 0.1296134774 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
14 Hb_006569_040 0.1311995744 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
15 Hb_003849_040 0.1330582793 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
16 Hb_000156_160 0.1338513459 - - PREDICTED: urease accessory protein G [Jatropha curcas]
17 Hb_003470_070 0.1342343523 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
18 Hb_001277_340 0.1380436617 - - aldo/keto reductase, putative [Ricinus communis]
19 Hb_004254_100 0.1382247978 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
20 Hb_000836_540 0.138691696 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000264_180 Hb_000264_180 Hb_001040_070 Hb_001040_070 Hb_000264_180--Hb_001040_070 Hb_000175_630 Hb_000175_630 Hb_000264_180--Hb_000175_630 Hb_006573_160 Hb_006573_160 Hb_000264_180--Hb_006573_160 Hb_003026_030 Hb_003026_030 Hb_000264_180--Hb_003026_030 Hb_044155_010 Hb_044155_010 Hb_000264_180--Hb_044155_010 Hb_001427_210 Hb_001427_210 Hb_000264_180--Hb_001427_210 Hb_005181_040 Hb_005181_040 Hb_001040_070--Hb_005181_040 Hb_000334_170 Hb_000334_170 Hb_001040_070--Hb_000334_170 Hb_003470_070 Hb_003470_070 Hb_001040_070--Hb_003470_070 Hb_004254_100 Hb_004254_100 Hb_001040_070--Hb_004254_100 Hb_005701_090 Hb_005701_090 Hb_001040_070--Hb_005701_090 Hb_000175_630--Hb_001427_210 Hb_000041_300 Hb_000041_300 Hb_000175_630--Hb_000041_300 Hb_000175_630--Hb_000334_170 Hb_000175_630--Hb_003470_070 Hb_012262_040 Hb_012262_040 Hb_000175_630--Hb_012262_040 Hb_001153_050 Hb_001153_050 Hb_006573_160--Hb_001153_050 Hb_011972_020 Hb_011972_020 Hb_006573_160--Hb_011972_020 Hb_002814_110 Hb_002814_110 Hb_006573_160--Hb_002814_110 Hb_098209_010 Hb_098209_010 Hb_006573_160--Hb_098209_010 Hb_000302_170 Hb_000302_170 Hb_006573_160--Hb_000302_170 Hb_000102_050 Hb_000102_050 Hb_006573_160--Hb_000102_050 Hb_003026_030--Hb_044155_010 Hb_002400_230 Hb_002400_230 Hb_003026_030--Hb_002400_230 Hb_002291_060 Hb_002291_060 Hb_003026_030--Hb_002291_060 Hb_000997_150 Hb_000997_150 Hb_003026_030--Hb_000997_150 Hb_002450_140 Hb_002450_140 Hb_003026_030--Hb_002450_140 Hb_000077_120 Hb_000077_120 Hb_044155_010--Hb_000077_120 Hb_013405_150 Hb_013405_150 Hb_044155_010--Hb_013405_150 Hb_044155_010--Hb_002291_060 Hb_006132_040 Hb_006132_040 Hb_044155_010--Hb_006132_040 Hb_000139_220 Hb_000139_220 Hb_044155_010--Hb_000139_220 Hb_000098_140 Hb_000098_140 Hb_044155_010--Hb_000098_140 Hb_001427_210--Hb_003470_070 Hb_001427_210--Hb_012262_040 Hb_000562_070 Hb_000562_070 Hb_001427_210--Hb_000562_070 Hb_000098_240 Hb_000098_240 Hb_001427_210--Hb_000098_240 Hb_020141_040 Hb_020141_040 Hb_001427_210--Hb_020141_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5242 18.2529 30.5195 9.93661 22.9222 8.97181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.83291 2.70938 3.14075 7.9176 20.8796

CAGE analysis