Hb_044155_010

Information

Type -
Description -
Location Contig44155: 251-2809
Sequence    

Annotation

kegg
ID rcu:RCOM_1153850
description heavy metal cation transport atpase, putative (EC:3.6.3.5)
nr
ID XP_012079313.1
description PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
swissprot
ID Q9M3H5
description Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic OS=Arabidopsis thaliana GN=HMA1 PE=2 SV=2
trembl
ID A0A067KAF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12459 PE=3 SV=1
Gene Ontology
ID GO:0009941
description probable cadmium zinc-transporting atpase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044155_010 0.0 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
2 Hb_000077_120 0.0724127875 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
3 Hb_013405_150 0.0820836044 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
4 Hb_002291_060 0.082573285 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
5 Hb_006132_040 0.103666862 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
6 Hb_000139_220 0.1042030835 - - leucine rich repeat-containing protein, putative [Ricinus communis]
7 Hb_000098_140 0.1047333521 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
8 Hb_000890_010 0.1058359824 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002890_150 0.1063098401 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
10 Hb_003849_040 0.1074498665 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
11 Hb_006573_160 0.1076471537 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
12 Hb_010998_040 0.1088804363 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
13 Hb_172257_010 0.1110530042 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
14 Hb_000345_490 0.1116511243 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
15 Hb_005288_080 0.1127800222 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000024_120 0.1135295174 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
17 Hb_005610_080 0.1141034151 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004223_110 0.1142565366 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
19 Hb_000102_050 0.1145082651 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
20 Hb_001454_220 0.115011153 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]

Gene co-expression network

sample Hb_044155_010 Hb_044155_010 Hb_000077_120 Hb_000077_120 Hb_044155_010--Hb_000077_120 Hb_013405_150 Hb_013405_150 Hb_044155_010--Hb_013405_150 Hb_002291_060 Hb_002291_060 Hb_044155_010--Hb_002291_060 Hb_006132_040 Hb_006132_040 Hb_044155_010--Hb_006132_040 Hb_000139_220 Hb_000139_220 Hb_044155_010--Hb_000139_220 Hb_000098_140 Hb_000098_140 Hb_044155_010--Hb_000098_140 Hb_000077_120--Hb_002291_060 Hb_002890_150 Hb_002890_150 Hb_000077_120--Hb_002890_150 Hb_000077_120--Hb_013405_150 Hb_000077_120--Hb_000139_220 Hb_000890_010 Hb_000890_010 Hb_000077_120--Hb_000890_010 Hb_013405_150--Hb_000890_010 Hb_013405_150--Hb_006132_040 Hb_013405_150--Hb_000139_220 Hb_000343_150 Hb_000343_150 Hb_013405_150--Hb_000343_150 Hb_002291_060--Hb_000139_220 Hb_000345_490 Hb_000345_490 Hb_002291_060--Hb_000345_490 Hb_010287_030 Hb_010287_030 Hb_002291_060--Hb_010287_030 Hb_172257_010 Hb_172257_010 Hb_002291_060--Hb_172257_010 Hb_005610_080 Hb_005610_080 Hb_006132_040--Hb_005610_080 Hb_006132_040--Hb_000890_010 Hb_004236_030 Hb_004236_030 Hb_006132_040--Hb_004236_030 Hb_003992_180 Hb_003992_180 Hb_006132_040--Hb_003992_180 Hb_000227_310 Hb_000227_310 Hb_006132_040--Hb_000227_310 Hb_008165_030 Hb_008165_030 Hb_006132_040--Hb_008165_030 Hb_000940_050 Hb_000940_050 Hb_000139_220--Hb_000940_050 Hb_009449_060 Hb_009449_060 Hb_000139_220--Hb_009449_060 Hb_000139_220--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_000139_220--Hb_000589_190 Hb_002067_030 Hb_002067_030 Hb_000098_140--Hb_002067_030 Hb_002615_120 Hb_002615_120 Hb_000098_140--Hb_002615_120 Hb_001636_050 Hb_001636_050 Hb_000098_140--Hb_001636_050 Hb_032202_080 Hb_032202_080 Hb_000098_140--Hb_032202_080 Hb_000457_230 Hb_000457_230 Hb_000098_140--Hb_000457_230 Hb_000023_320 Hb_000023_320 Hb_000098_140--Hb_000023_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1108 16.4512 23.4172 7.55499 15.0536 7.63341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.85333 4.8209 2.68273 4.77784 7.82134

CAGE analysis