Hb_002890_150

Information

Type -
Description -
Location Contig2890: 232322-241759
Sequence    

Annotation

kegg
ID rcu:RCOM_0495890
description ATP-dependent clp protease ATP-binding subunit clpx, putative
nr
ID XP_012069122.1
description PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
swissprot
ID B0V4T7
description ATP-dependent Clp protease ATP-binding subunit ClpX OS=Acinetobacter baumannii (strain AYE) GN=clpX PE=3 SV=1
trembl
ID A0A067L0Y3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24892 PE=4 SV=1
Gene Ontology
ID GO:0005524
description atp-dependent clp protease atp-binding subunit clpx- mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30207: 232210-241712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_150 0.0 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
2 Hb_000077_120 0.0782232444 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
3 Hb_003849_040 0.0787475434 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
4 Hb_000985_040 0.1059797031 transcription factor TF Family: Orphans B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]
5 Hb_044155_010 0.1063098401 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
6 Hb_005054_190 0.110498317 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
7 Hb_005610_080 0.1115438604 - - conserved hypothetical protein [Ricinus communis]
8 Hb_016734_090 0.1135002092 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
9 Hb_013405_150 0.1157188249 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
10 Hb_000890_010 0.1161025432 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000077_010 0.1167535592 - - unnamed protein product [Vitis vinifera]
12 Hb_001269_200 0.1197568473 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
13 Hb_000345_490 0.1206309243 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
14 Hb_002291_060 0.1207325847 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
15 Hb_004079_120 0.1230196899 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
16 Hb_003430_030 0.1233086517 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
17 Hb_000024_120 0.1258221318 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
18 Hb_009265_050 0.1258293069 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
19 Hb_002739_130 0.1259458904 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
20 Hb_000165_140 0.1295260628 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_002890_150 Hb_002890_150 Hb_000077_120 Hb_000077_120 Hb_002890_150--Hb_000077_120 Hb_003849_040 Hb_003849_040 Hb_002890_150--Hb_003849_040 Hb_000985_040 Hb_000985_040 Hb_002890_150--Hb_000985_040 Hb_044155_010 Hb_044155_010 Hb_002890_150--Hb_044155_010 Hb_005054_190 Hb_005054_190 Hb_002890_150--Hb_005054_190 Hb_005610_080 Hb_005610_080 Hb_002890_150--Hb_005610_080 Hb_002291_060 Hb_002291_060 Hb_000077_120--Hb_002291_060 Hb_000077_120--Hb_044155_010 Hb_013405_150 Hb_013405_150 Hb_000077_120--Hb_013405_150 Hb_000139_220 Hb_000139_220 Hb_000077_120--Hb_000139_220 Hb_000890_010 Hb_000890_010 Hb_000077_120--Hb_000890_010 Hb_000156_160 Hb_000156_160 Hb_003849_040--Hb_000156_160 Hb_000077_010 Hb_000077_010 Hb_003849_040--Hb_000077_010 Hb_003849_040--Hb_000985_040 Hb_003849_040--Hb_000077_120 Hb_003849_040--Hb_044155_010 Hb_010287_030 Hb_010287_030 Hb_000985_040--Hb_010287_030 Hb_000985_040--Hb_000077_120 Hb_011344_070 Hb_011344_070 Hb_000985_040--Hb_011344_070 Hb_048476_150 Hb_048476_150 Hb_000985_040--Hb_048476_150 Hb_044155_010--Hb_013405_150 Hb_044155_010--Hb_002291_060 Hb_006132_040 Hb_006132_040 Hb_044155_010--Hb_006132_040 Hb_044155_010--Hb_000139_220 Hb_000098_140 Hb_000098_140 Hb_044155_010--Hb_000098_140 Hb_003430_030 Hb_003430_030 Hb_005054_190--Hb_003430_030 Hb_000024_120 Hb_000024_120 Hb_005054_190--Hb_000024_120 Hb_000363_280 Hb_000363_280 Hb_005054_190--Hb_000363_280 Hb_005054_190--Hb_005610_080 Hb_000345_490 Hb_000345_490 Hb_005054_190--Hb_000345_490 Hb_011918_050 Hb_011918_050 Hb_005054_190--Hb_011918_050 Hb_005610_080--Hb_006132_040 Hb_005610_080--Hb_000024_120 Hb_005610_080--Hb_003430_030 Hb_005610_080--Hb_000345_490 Hb_005610_080--Hb_000890_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.3786 28.153 47.8481 9.23038 23.0025 19.5922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.39242 5.01963 4.44268 8.33572 11.9127

CAGE analysis