Hb_000985_040

Information

Type transcription factor
Description TF Family: Orphans
Location Contig985: 55513-62128
Sequence    

Annotation

kegg
ID tcc:TCM_002458
description B-box type zinc finger protein with CCT domain isoform 1
nr
ID XP_007049415.1
description B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]
swissprot
ID Q9SSE5
description Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1
trembl
ID A0A061DL86
description B-box type zinc finger protein with CCT domain isoform 1 OS=Theobroma cacao GN=TCM_002458 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger protein constans-like 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64615: 55520-57264 , PASA_asmbl_64616: 56023-58991 , PASA_asmbl_64618: 59023-60478 , PASA_asmbl_64619: 60650-61654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000985_040 0.0 transcription factor TF Family: Orphans B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]
2 Hb_003849_040 0.1047448468 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
3 Hb_002890_150 0.1059797031 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
4 Hb_010287_030 0.1084473864 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000077_120 0.1136456204 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
6 Hb_011344_070 0.1234733175 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
7 Hb_048476_150 0.1250833953 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
8 Hb_001662_040 0.1266157916 - - DNA helicase, putative [Ricinus communis]
9 Hb_000538_260 0.1300711744 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
10 Hb_000139_220 0.1320454762 - - leucine rich repeat-containing protein, putative [Ricinus communis]
11 Hb_002291_060 0.1328911347 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
12 Hb_004800_150 0.1348536133 transcription factor TF Family: SNF2 PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]
13 Hb_163591_010 0.1355188054 - - PREDICTED: amidase 1-like isoform X2 [Populus euphratica]
14 Hb_075203_010 0.1366685622 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
15 Hb_016734_090 0.1385755252 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
16 Hb_009265_050 0.1425645385 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
17 Hb_000134_250 0.1454801366 - - protein with unknown function [Ricinus communis]
18 Hb_000165_140 0.1459490746 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
19 Hb_001269_200 0.1467717192 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
20 Hb_005054_190 0.1474647625 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000985_040 Hb_000985_040 Hb_003849_040 Hb_003849_040 Hb_000985_040--Hb_003849_040 Hb_002890_150 Hb_002890_150 Hb_000985_040--Hb_002890_150 Hb_010287_030 Hb_010287_030 Hb_000985_040--Hb_010287_030 Hb_000077_120 Hb_000077_120 Hb_000985_040--Hb_000077_120 Hb_011344_070 Hb_011344_070 Hb_000985_040--Hb_011344_070 Hb_048476_150 Hb_048476_150 Hb_000985_040--Hb_048476_150 Hb_003849_040--Hb_002890_150 Hb_000156_160 Hb_000156_160 Hb_003849_040--Hb_000156_160 Hb_000077_010 Hb_000077_010 Hb_003849_040--Hb_000077_010 Hb_003849_040--Hb_000077_120 Hb_044155_010 Hb_044155_010 Hb_003849_040--Hb_044155_010 Hb_002890_150--Hb_000077_120 Hb_002890_150--Hb_044155_010 Hb_005054_190 Hb_005054_190 Hb_002890_150--Hb_005054_190 Hb_005610_080 Hb_005610_080 Hb_002890_150--Hb_005610_080 Hb_004724_370 Hb_004724_370 Hb_010287_030--Hb_004724_370 Hb_000302_170 Hb_000302_170 Hb_010287_030--Hb_000302_170 Hb_008165_030 Hb_008165_030 Hb_010287_030--Hb_008165_030 Hb_001674_040 Hb_001674_040 Hb_010287_030--Hb_001674_040 Hb_030545_030 Hb_030545_030 Hb_010287_030--Hb_030545_030 Hb_006573_160 Hb_006573_160 Hb_010287_030--Hb_006573_160 Hb_002291_060 Hb_002291_060 Hb_000077_120--Hb_002291_060 Hb_000077_120--Hb_044155_010 Hb_013405_150 Hb_013405_150 Hb_000077_120--Hb_013405_150 Hb_000139_220 Hb_000139_220 Hb_000077_120--Hb_000139_220 Hb_000890_010 Hb_000890_010 Hb_000077_120--Hb_000890_010 Hb_009659_030 Hb_009659_030 Hb_011344_070--Hb_009659_030 Hb_011344_070--Hb_000139_220 Hb_000940_050 Hb_000940_050 Hb_011344_070--Hb_000940_050 Hb_075203_010 Hb_075203_010 Hb_011344_070--Hb_075203_010 Hb_004800_150 Hb_004800_150 Hb_011344_070--Hb_004800_150 Hb_002471_180 Hb_002471_180 Hb_048476_150--Hb_002471_180 Hb_001021_220 Hb_001021_220 Hb_048476_150--Hb_001021_220 Hb_001163_120 Hb_001163_120 Hb_048476_150--Hb_001163_120 Hb_013726_080 Hb_013726_080 Hb_048476_150--Hb_013726_080 Hb_001377_110 Hb_001377_110 Hb_048476_150--Hb_001377_110 Hb_000031_280 Hb_000031_280 Hb_048476_150--Hb_000031_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8746 9.4335 20.9083 6.57778 7.71604 10.603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.91124 1.64368 1.32685 6.71232 5.2866

CAGE analysis