Hb_004800_150

Information

Type transcription factor
Description TF Family: SNF2
Location Contig4800: 113410-121945
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12710g
description POPTRDRAFT_820023; DECREASED DNA METHYLATION 1 family protein
nr
ID XP_012072038.1
description PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]
swissprot
ID Q9XFH4
description ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana GN=DDM1 PE=1 SV=1
trembl
ID A0A067L1E8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05196 PE=4 SV=1
Gene Ontology
ID GO:0000786
description atp-dependent dna helicase ddm1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44693: 116128-120167 , PASA_asmbl_44694: 120301-121782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_150 0.0 transcription factor TF Family: SNF2 PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]
2 Hb_004611_030 0.0917234673 - - structural maintenance of chromosomes 5 smc5, putative [Ricinus communis]
3 Hb_163591_010 0.1209445154 - - PREDICTED: amidase 1-like isoform X2 [Populus euphratica]
4 Hb_009659_030 0.1217627074 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
5 Hb_164945_010 0.1218627459 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
6 Hb_000009_610 0.1220337116 - - PREDICTED: uncharacterized protein LOC105639638 isoform X2 [Jatropha curcas]
7 Hb_011344_070 0.1229472706 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
8 Hb_000134_250 0.1253744132 - - protein with unknown function [Ricinus communis]
9 Hb_010287_030 0.126695713 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005833_030 0.1281627633 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
11 Hb_016347_020 0.1309435688 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
12 Hb_001662_040 0.1315759836 - - DNA helicase, putative [Ricinus communis]
13 Hb_000994_020 0.1343072108 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
14 Hb_005322_050 0.1347591739 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
15 Hb_000985_040 0.1348536133 transcription factor TF Family: Orphans B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]
16 Hb_000034_080 0.1375243827 - - PREDICTED: MADS-box protein AGL24-like isoform X1 [Jatropha curcas]
17 Hb_075203_010 0.1378354898 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
18 Hb_009449_060 0.1401190154 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
19 Hb_007163_060 0.1403602716 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
20 Hb_000302_170 0.1421455311 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]

Gene co-expression network

sample Hb_004800_150 Hb_004800_150 Hb_004611_030 Hb_004611_030 Hb_004800_150--Hb_004611_030 Hb_163591_010 Hb_163591_010 Hb_004800_150--Hb_163591_010 Hb_009659_030 Hb_009659_030 Hb_004800_150--Hb_009659_030 Hb_164945_010 Hb_164945_010 Hb_004800_150--Hb_164945_010 Hb_000009_610 Hb_000009_610 Hb_004800_150--Hb_000009_610 Hb_011344_070 Hb_011344_070 Hb_004800_150--Hb_011344_070 Hb_000181_290 Hb_000181_290 Hb_004611_030--Hb_000181_290 Hb_073171_090 Hb_073171_090 Hb_004611_030--Hb_073171_090 Hb_005322_050 Hb_005322_050 Hb_004611_030--Hb_005322_050 Hb_000302_170 Hb_000302_170 Hb_004611_030--Hb_000302_170 Hb_007163_060 Hb_007163_060 Hb_004611_030--Hb_007163_060 Hb_001662_040 Hb_001662_040 Hb_163591_010--Hb_001662_040 Hb_009449_060 Hb_009449_060 Hb_163591_010--Hb_009449_060 Hb_000002_120 Hb_000002_120 Hb_163591_010--Hb_000002_120 Hb_000139_220 Hb_000139_220 Hb_163591_010--Hb_000139_220 Hb_010287_030 Hb_010287_030 Hb_163591_010--Hb_010287_030 Hb_002928_010 Hb_002928_010 Hb_163591_010--Hb_002928_010 Hb_075203_010 Hb_075203_010 Hb_009659_030--Hb_075203_010 Hb_000134_250 Hb_000134_250 Hb_009659_030--Hb_000134_250 Hb_000994_020 Hb_000994_020 Hb_009659_030--Hb_000994_020 Hb_009659_030--Hb_011344_070 Hb_000940_050 Hb_000940_050 Hb_009659_030--Hb_000940_050 Hb_005833_030 Hb_005833_030 Hb_009659_030--Hb_005833_030 Hb_000836_300 Hb_000836_300 Hb_164945_010--Hb_000836_300 Hb_000958_080 Hb_000958_080 Hb_164945_010--Hb_000958_080 Hb_000046_080 Hb_000046_080 Hb_164945_010--Hb_000046_080 Hb_164945_010--Hb_007163_060 Hb_164945_010--Hb_005322_050 Hb_083628_010 Hb_083628_010 Hb_164945_010--Hb_083628_010 Hb_000009_610--Hb_011344_070 Hb_010812_070 Hb_010812_070 Hb_000009_610--Hb_010812_070 Hb_000320_050 Hb_000320_050 Hb_000009_610--Hb_000320_050 Hb_004957_020 Hb_004957_020 Hb_000009_610--Hb_004957_020 Hb_000009_610--Hb_164945_010 Hb_011344_070--Hb_000139_220 Hb_011344_070--Hb_000940_050 Hb_011344_070--Hb_075203_010 Hb_000985_040 Hb_000985_040 Hb_011344_070--Hb_000985_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.90434 3.83624 8.63058 5.47204 3.20877 3.20719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.27154 0.790118 0.86538 4.2158 1.43374

CAGE analysis