Hb_163591_010

Information

Type -
Description -
Location Contig163591: 928-2292
Sequence    

Annotation

kegg
ID pop:POPTR_0013s025002
description hypothetical protein
nr
ID XP_011023587.1
description PREDICTED: amidase 1-like isoform X2 [Populus euphratica]
swissprot
ID Q9FR37
description Amidase 1 OS=Arabidopsis thaliana GN=AMI1 PE=1 SV=1
trembl
ID A0A067JU59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23363 PE=4 SV=1
Gene Ontology
ID GO:0005829
description amidase 1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163591_010 0.0 - - PREDICTED: amidase 1-like isoform X2 [Populus euphratica]
2 Hb_001662_040 0.0817324404 - - DNA helicase, putative [Ricinus communis]
3 Hb_009449_060 0.1088628655 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
4 Hb_000002_120 0.1109562495 - - PREDICTED: uncharacterized protein LOC105782064 [Gossypium raimondii]
5 Hb_000139_220 0.1152535501 - - leucine rich repeat-containing protein, putative [Ricinus communis]
6 Hb_010287_030 0.1196981053 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002928_010 0.1198503702 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
8 Hb_004800_150 0.1209445154 transcription factor TF Family: SNF2 PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]
9 Hb_002067_030 0.1220059737 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
10 Hb_004128_200 0.1225881286 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
11 Hb_039605_010 0.1231451804 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
12 Hb_000236_490 0.1231860367 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
13 Hb_011249_030 0.1236823523 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
14 Hb_000098_140 0.1239757966 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
15 Hb_003096_060 0.1247643117 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
16 Hb_007432_070 0.1254591635 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
17 Hb_003994_140 0.1258809617 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001807_010 0.1261089834 - - hypothetical protein MTR_6g077630 [Medicago truncatula]
19 Hb_000077_120 0.1266327616 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
20 Hb_000034_080 0.1267301599 - - PREDICTED: MADS-box protein AGL24-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_163591_010 Hb_163591_010 Hb_001662_040 Hb_001662_040 Hb_163591_010--Hb_001662_040 Hb_009449_060 Hb_009449_060 Hb_163591_010--Hb_009449_060 Hb_000002_120 Hb_000002_120 Hb_163591_010--Hb_000002_120 Hb_000139_220 Hb_000139_220 Hb_163591_010--Hb_000139_220 Hb_010287_030 Hb_010287_030 Hb_163591_010--Hb_010287_030 Hb_002928_010 Hb_002928_010 Hb_163591_010--Hb_002928_010 Hb_001662_040--Hb_000002_120 Hb_000023_320 Hb_000023_320 Hb_001662_040--Hb_000023_320 Hb_002067_030 Hb_002067_030 Hb_001662_040--Hb_002067_030 Hb_000371_010 Hb_000371_010 Hb_001662_040--Hb_000371_010 Hb_000098_140 Hb_000098_140 Hb_001662_040--Hb_000098_140 Hb_004096_160 Hb_004096_160 Hb_009449_060--Hb_004096_160 Hb_002909_040 Hb_002909_040 Hb_009449_060--Hb_002909_040 Hb_172257_010 Hb_172257_010 Hb_009449_060--Hb_172257_010 Hb_000958_080 Hb_000958_080 Hb_009449_060--Hb_000958_080 Hb_000866_450 Hb_000866_450 Hb_009449_060--Hb_000866_450 Hb_007163_060 Hb_007163_060 Hb_009449_060--Hb_007163_060 Hb_005975_010 Hb_005975_010 Hb_000002_120--Hb_005975_010 Hb_003579_050 Hb_003579_050 Hb_000002_120--Hb_003579_050 Hb_000002_120--Hb_000371_010 Hb_034243_040 Hb_034243_040 Hb_000002_120--Hb_034243_040 Hb_000002_120--Hb_000098_140 Hb_000077_120 Hb_000077_120 Hb_000139_220--Hb_000077_120 Hb_002291_060 Hb_002291_060 Hb_000139_220--Hb_002291_060 Hb_000940_050 Hb_000940_050 Hb_000139_220--Hb_000940_050 Hb_000139_220--Hb_009449_060 Hb_000139_220--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_000139_220--Hb_000589_190 Hb_004724_370 Hb_004724_370 Hb_010287_030--Hb_004724_370 Hb_000302_170 Hb_000302_170 Hb_010287_030--Hb_000302_170 Hb_008165_030 Hb_008165_030 Hb_010287_030--Hb_008165_030 Hb_001674_040 Hb_001674_040 Hb_010287_030--Hb_001674_040 Hb_030545_030 Hb_030545_030 Hb_010287_030--Hb_030545_030 Hb_006573_160 Hb_006573_160 Hb_010287_030--Hb_006573_160 Hb_039605_010 Hb_039605_010 Hb_002928_010--Hb_039605_010 Hb_003994_140 Hb_003994_140 Hb_002928_010--Hb_003994_140 Hb_027073_030 Hb_027073_030 Hb_002928_010--Hb_027073_030 Hb_058972_010 Hb_058972_010 Hb_002928_010--Hb_058972_010 Hb_000414_050 Hb_000414_050 Hb_002928_010--Hb_000414_050 Hb_001418_040 Hb_001418_040 Hb_002928_010--Hb_001418_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0262 13.8748 29.0637 11.3541 14.3061 12.5236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.09564 7.79901 2.79784 11.5651 4.18408

CAGE analysis