Hb_000371_010

Information

Type -
Description -
Location Contig371: 3241-14202
Sequence    

Annotation

kegg
ID rcu:RCOM_0553210
description xaa-pro aminopeptidase, putative (EC:3.4.11.9)
nr
ID XP_012079078.1
description PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
swissprot
ID D1ZKF3
description Probable Xaa-Pro aminopeptidase P OS=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) GN=AMPP PE=3 SV=1
trembl
ID A0A067K6F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12262 PE=3 SV=1
Gene Ontology
ID GO:0005829
description probable xaa-pro aminopeptidase p

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38036: 3228-14195
cDNA
(Sanger)
(ID:Location)		 005_G23.ab1: 3254-5393 , 011_C18.ab1: 3228-5409 , 022_K06.ab1: 3254-5226 , 038_G07.ab1: 3253-5415 , 040_F16.ab1: 3228-5387

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000371_010 0.0 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
2 Hb_128548_010 0.0820299282 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000224_150 0.0822748174 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial [Jatropha curcas]
4 Hb_000002_120 0.084761734 - - PREDICTED: uncharacterized protein LOC105782064 [Gossypium raimondii]
5 Hb_002326_110 0.0912336904 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
6 Hb_033642_040 0.0953075033 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
7 Hb_002311_310 0.0954028354 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
8 Hb_000523_080 0.0982728537 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
9 Hb_001662_040 0.0991006155 - - DNA helicase, putative [Ricinus communis]
10 Hb_000103_570 0.1003366752 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
11 Hb_000373_080 0.1005500726 - - PREDICTED: serine decarboxylase [Jatropha curcas]
12 Hb_000098_140 0.1006727274 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
13 Hb_000254_100 0.1007937519 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
14 Hb_003186_020 0.1015297891 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
15 Hb_034243_040 0.1017213104 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
16 Hb_000847_080 0.1032345995 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
17 Hb_002870_020 0.103705801 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
18 Hb_005649_100 0.1060151486 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
19 Hb_002067_030 0.1069883228 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
20 Hb_016777_040 0.1070992815 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]

Gene co-expression network

sample Hb_000371_010 Hb_000371_010 Hb_128548_010 Hb_128548_010 Hb_000371_010--Hb_128548_010 Hb_000224_150 Hb_000224_150 Hb_000371_010--Hb_000224_150 Hb_000002_120 Hb_000002_120 Hb_000371_010--Hb_000002_120 Hb_002326_110 Hb_002326_110 Hb_000371_010--Hb_002326_110 Hb_033642_040 Hb_033642_040 Hb_000371_010--Hb_033642_040 Hb_002311_310 Hb_002311_310 Hb_000371_010--Hb_002311_310 Hb_000523_080 Hb_000523_080 Hb_128548_010--Hb_000523_080 Hb_001430_080 Hb_001430_080 Hb_128548_010--Hb_001430_080 Hb_001723_140 Hb_001723_140 Hb_128548_010--Hb_001723_140 Hb_008568_020 Hb_008568_020 Hb_128548_010--Hb_008568_020 Hb_003943_020 Hb_003943_020 Hb_128548_010--Hb_003943_020 Hb_001584_350 Hb_001584_350 Hb_128548_010--Hb_001584_350 Hb_138435_010 Hb_138435_010 Hb_000224_150--Hb_138435_010 Hb_000457_230 Hb_000457_230 Hb_000224_150--Hb_000457_230 Hb_032202_080 Hb_032202_080 Hb_000224_150--Hb_032202_080 Hb_003186_020 Hb_003186_020 Hb_000224_150--Hb_003186_020 Hb_000640_160 Hb_000640_160 Hb_000224_150--Hb_000640_160 Hb_005975_010 Hb_005975_010 Hb_000002_120--Hb_005975_010 Hb_003579_050 Hb_003579_050 Hb_000002_120--Hb_003579_050 Hb_001662_040 Hb_001662_040 Hb_000002_120--Hb_001662_040 Hb_034243_040 Hb_034243_040 Hb_000002_120--Hb_034243_040 Hb_000098_140 Hb_000098_140 Hb_000002_120--Hb_000098_140 Hb_005649_100 Hb_005649_100 Hb_002326_110--Hb_005649_100 Hb_000085_170 Hb_000085_170 Hb_002326_110--Hb_000085_170 Hb_000317_510 Hb_000317_510 Hb_002326_110--Hb_000317_510 Hb_000847_080 Hb_000847_080 Hb_002326_110--Hb_000847_080 Hb_000373_080 Hb_000373_080 Hb_002326_110--Hb_000373_080 Hb_002909_040 Hb_002909_040 Hb_002326_110--Hb_002909_040 Hb_004096_060 Hb_004096_060 Hb_033642_040--Hb_004096_060 Hb_000098_240 Hb_000098_240 Hb_033642_040--Hb_000098_240 Hb_000175_410 Hb_000175_410 Hb_033642_040--Hb_000175_410 Hb_000820_150 Hb_000820_150 Hb_033642_040--Hb_000820_150 Hb_016777_040 Hb_016777_040 Hb_033642_040--Hb_016777_040 Hb_008397_010 Hb_008397_010 Hb_033642_040--Hb_008397_010 Hb_027472_120 Hb_027472_120 Hb_002311_310--Hb_027472_120 Hb_001005_030 Hb_001005_030 Hb_002311_310--Hb_001005_030 Hb_000922_020 Hb_000922_020 Hb_002311_310--Hb_000922_020 Hb_002311_310--Hb_032202_080 Hb_001089_070 Hb_001089_070 Hb_002311_310--Hb_001089_070 Hb_007929_080 Hb_007929_080 Hb_002311_310--Hb_007929_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.0059 18.2466 44.483 16.1031 20.3712 17.2199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5985 8.25302 10.4627 25.9159 20.3884

CAGE analysis