Hb_001662_040

Information

Type -
Description -
Location Contig1662: 70048-76994
Sequence    

Annotation

kegg
ID rcu:RCOM_0017330
description DNA helicase, putative
nr
ID XP_002530733.1
description DNA helicase, putative [Ricinus communis]
swissprot
ID Q9FT72
description ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana GN=RECQL3 PE=1 SV=1
trembl
ID B9SXL4
description DNA helicase, putative OS=Ricinus communis GN=RCOM_0017330 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent dna helicase q-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15321: 70165-71010 , PASA_asmbl_15322: 73447-73938 , PASA_asmbl_15323: 74078-74221 , PASA_asmbl_15324: 74322-76653
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001662_040 0.0 - - DNA helicase, putative [Ricinus communis]
2 Hb_163591_010 0.0817324404 - - PREDICTED: amidase 1-like isoform X2 [Populus euphratica]
3 Hb_000002_120 0.0913320402 - - PREDICTED: uncharacterized protein LOC105782064 [Gossypium raimondii]
4 Hb_000023_320 0.0975707415 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002067_030 0.0980121238 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
6 Hb_000371_010 0.0991006155 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
7 Hb_000098_140 0.0991885395 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
8 Hb_000086_560 0.1006229112 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
9 Hb_001832_130 0.104152764 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
10 Hb_002311_310 0.105832475 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
11 Hb_128548_010 0.1072288596 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000359_120 0.1077108979 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001301_220 0.1082246076 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
14 Hb_010287_030 0.108877061 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005333_160 0.1099118618 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
16 Hb_007432_070 0.111455217 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
17 Hb_034243_040 0.1115451109 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
18 Hb_006658_040 0.1118245968 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
19 Hb_005289_040 0.1127363408 - - poly(A) polymerase, putative [Ricinus communis]
20 Hb_003638_090 0.1134055138 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]

Gene co-expression network

sample Hb_001662_040 Hb_001662_040 Hb_163591_010 Hb_163591_010 Hb_001662_040--Hb_163591_010 Hb_000002_120 Hb_000002_120 Hb_001662_040--Hb_000002_120 Hb_000023_320 Hb_000023_320 Hb_001662_040--Hb_000023_320 Hb_002067_030 Hb_002067_030 Hb_001662_040--Hb_002067_030 Hb_000371_010 Hb_000371_010 Hb_001662_040--Hb_000371_010 Hb_000098_140 Hb_000098_140 Hb_001662_040--Hb_000098_140 Hb_009449_060 Hb_009449_060 Hb_163591_010--Hb_009449_060 Hb_163591_010--Hb_000002_120 Hb_000139_220 Hb_000139_220 Hb_163591_010--Hb_000139_220 Hb_010287_030 Hb_010287_030 Hb_163591_010--Hb_010287_030 Hb_002928_010 Hb_002928_010 Hb_163591_010--Hb_002928_010 Hb_005975_010 Hb_005975_010 Hb_000002_120--Hb_005975_010 Hb_003579_050 Hb_003579_050 Hb_000002_120--Hb_003579_050 Hb_000002_120--Hb_000371_010 Hb_034243_040 Hb_034243_040 Hb_000002_120--Hb_034243_040 Hb_000002_120--Hb_000098_140 Hb_000926_010 Hb_000926_010 Hb_000023_320--Hb_000926_010 Hb_001636_050 Hb_001636_050 Hb_000023_320--Hb_001636_050 Hb_000264_070 Hb_000264_070 Hb_000023_320--Hb_000264_070 Hb_001047_200 Hb_001047_200 Hb_000023_320--Hb_001047_200 Hb_000679_340 Hb_000679_340 Hb_000023_320--Hb_000679_340 Hb_143766_110 Hb_143766_110 Hb_000023_320--Hb_143766_110 Hb_002067_030--Hb_000098_140 Hb_154580_010 Hb_154580_010 Hb_002067_030--Hb_154580_010 Hb_002067_030--Hb_001636_050 Hb_000260_680 Hb_000260_680 Hb_002067_030--Hb_000260_680 Hb_013394_030 Hb_013394_030 Hb_002067_030--Hb_013394_030 Hb_000329_590 Hb_000329_590 Hb_002067_030--Hb_000329_590 Hb_128548_010 Hb_128548_010 Hb_000371_010--Hb_128548_010 Hb_000224_150 Hb_000224_150 Hb_000371_010--Hb_000224_150 Hb_002326_110 Hb_002326_110 Hb_000371_010--Hb_002326_110 Hb_033642_040 Hb_033642_040 Hb_000371_010--Hb_033642_040 Hb_002311_310 Hb_002311_310 Hb_000371_010--Hb_002311_310 Hb_002615_120 Hb_002615_120 Hb_000098_140--Hb_002615_120 Hb_000098_140--Hb_001636_050 Hb_032202_080 Hb_032202_080 Hb_000098_140--Hb_032202_080 Hb_000457_230 Hb_000457_230 Hb_000098_140--Hb_000457_230 Hb_000098_140--Hb_000023_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.03927 4.893 9.75322 3.25345 6.21183 4.74673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.18208 1.84196 1.45299 5.36141 2.5064

CAGE analysis