Hb_002311_310

Information

Type -
Description -
Location Contig2311: 154885-159083
Sequence    

Annotation

kegg
ID vvi:100246622
description uncharacterized LOC100246622
nr
ID XP_002273165.1
description PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
swissprot
ID Q9Y4D2
description Sn1-specific diacylglycerol lipase alpha OS=Homo sapiens GN=DAGLA PE=1 SV=3
trembl
ID D7SY96
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01790 PE=4 SV=1
Gene Ontology
ID GO:0005886
description lipase class 3 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24325: 155072-155648 , PASA_asmbl_24326: 155160-155599 , PASA_asmbl_24328: 155679-158978
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_310 0.0 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
2 Hb_027472_120 0.0597260654 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_001005_030 0.0753078756 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
4 Hb_000922_020 0.0755570574 - - protein binding protein, putative [Ricinus communis]
5 Hb_032202_080 0.0774036831 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
6 Hb_001089_070 0.0780928955 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
7 Hb_007929_080 0.0794306352 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
8 Hb_002374_260 0.0794792749 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
9 Hb_002067_030 0.0813498145 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
10 Hb_003638_090 0.0824012286 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
11 Hb_132840_010 0.0824931289 - - serine/threonine-protein kinase, putative [Ricinus communis]
12 Hb_001821_160 0.0836288333 - - serine/arginine rich splicing factor, putative [Ricinus communis]
13 Hb_017151_010 0.0855441933 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
14 Hb_128548_010 0.0858409592 - - conserved hypothetical protein [Ricinus communis]
15 Hb_162286_010 0.0859192264 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
16 Hb_034243_040 0.0859915444 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
17 Hb_013394_030 0.0868377939 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
18 Hb_000115_280 0.0874428872 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
19 Hb_138435_010 0.0880834704 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
20 Hb_003579_050 0.0882331589 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_310 Hb_002311_310 Hb_027472_120 Hb_027472_120 Hb_002311_310--Hb_027472_120 Hb_001005_030 Hb_001005_030 Hb_002311_310--Hb_001005_030 Hb_000922_020 Hb_000922_020 Hb_002311_310--Hb_000922_020 Hb_032202_080 Hb_032202_080 Hb_002311_310--Hb_032202_080 Hb_001089_070 Hb_001089_070 Hb_002311_310--Hb_001089_070 Hb_007929_080 Hb_007929_080 Hb_002311_310--Hb_007929_080 Hb_004007_220 Hb_004007_220 Hb_027472_120--Hb_004007_220 Hb_027472_120--Hb_001005_030 Hb_001821_160 Hb_001821_160 Hb_027472_120--Hb_001821_160 Hb_150651_030 Hb_150651_030 Hb_027472_120--Hb_150651_030 Hb_000915_080 Hb_000915_080 Hb_027472_120--Hb_000915_080 Hb_000362_170 Hb_000362_170 Hb_001005_030--Hb_000362_170 Hb_000373_080 Hb_000373_080 Hb_001005_030--Hb_000373_080 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020 Hb_001405_190 Hb_001405_190 Hb_000922_020--Hb_001405_190 Hb_005288_080 Hb_005288_080 Hb_000922_020--Hb_005288_080 Hb_000679_340 Hb_000679_340 Hb_000922_020--Hb_000679_340 Hb_022256_060 Hb_022256_060 Hb_000922_020--Hb_022256_060 Hb_000922_020--Hb_032202_080 Hb_001077_030 Hb_001077_030 Hb_000922_020--Hb_001077_030 Hb_000457_230 Hb_000457_230 Hb_032202_080--Hb_000457_230 Hb_002615_120 Hb_002615_120 Hb_032202_080--Hb_002615_120 Hb_001776_060 Hb_001776_060 Hb_032202_080--Hb_001776_060 Hb_138435_010 Hb_138435_010 Hb_032202_080--Hb_138435_010 Hb_008568_020 Hb_008568_020 Hb_032202_080--Hb_008568_020 Hb_032202_080--Hb_001405_190 Hb_016777_040 Hb_016777_040 Hb_001089_070--Hb_016777_040 Hb_005289_040 Hb_005289_040 Hb_001089_070--Hb_005289_040 Hb_000603_030 Hb_000603_030 Hb_001089_070--Hb_000603_030 Hb_001089_070--Hb_001005_030 Hb_021943_080 Hb_021943_080 Hb_001089_070--Hb_021943_080 Hb_005588_090 Hb_005588_090 Hb_001089_070--Hb_005588_090 Hb_002571_030 Hb_002571_030 Hb_007929_080--Hb_002571_030 Hb_009771_110 Hb_009771_110 Hb_007929_080--Hb_009771_110 Hb_000523_080 Hb_000523_080 Hb_007929_080--Hb_000523_080 Hb_007929_080--Hb_001405_190 Hb_001377_110 Hb_001377_110 Hb_007929_080--Hb_001377_110 Hb_006618_090 Hb_006618_090 Hb_007929_080--Hb_006618_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9916 10.7721 20.699 8.57677 17.632 12.247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.69703 6.39091 7.87793 11.1891 11.4012

CAGE analysis