Hb_000224_150

Information

Type -
Description -
Location Contig224: 91464-97639
Sequence    

Annotation

kegg
ID rcu:RCOM_0511130
description 3-oxoacyl-[acyl-carrier-protein] synthase, putative (EC:2.3.1.41)
nr
ID XP_012080672.1
description PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial [Jatropha curcas]
swissprot
ID Q8L3X9
description 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Arabidopsis thaliana GN=KAS PE=1 SV=1
trembl
ID A0A067K3N9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13779 PE=3 SV=1
Gene Ontology
ID GO:0004315
description 3-oxoacyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23297: 91512-93041 , PASA_asmbl_23298: 93206-93875 , PASA_asmbl_23299: 93206-93875 , PASA_asmbl_23300: 93985-96173 , PASA_asmbl_23301: 97112-97461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000224_150 0.0 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial [Jatropha curcas]
2 Hb_138435_010 0.0736280126 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
3 Hb_000457_230 0.0763268361 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
4 Hb_032202_080 0.0814553267 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
5 Hb_000371_010 0.0822748174 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
6 Hb_003186_020 0.0828710197 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
7 Hb_000640_160 0.0861520891 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
8 Hb_000254_100 0.0865086019 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
9 Hb_001377_110 0.087259486 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
10 Hb_002304_060 0.0877375329 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
11 Hb_003225_020 0.0884715175 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
12 Hb_000115_280 0.0885342264 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
13 Hb_031284_010 0.0890467827 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
14 Hb_000373_080 0.0910316543 - - PREDICTED: serine decarboxylase [Jatropha curcas]
15 Hb_000245_150 0.0920737146 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
16 Hb_002311_310 0.0921037295 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
17 Hb_128548_010 0.0921626426 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002615_120 0.0928719512 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
19 Hb_002870_020 0.0929084471 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
20 Hb_005975_010 0.0937453597 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000224_150 Hb_000224_150 Hb_138435_010 Hb_138435_010 Hb_000224_150--Hb_138435_010 Hb_000457_230 Hb_000457_230 Hb_000224_150--Hb_000457_230 Hb_032202_080 Hb_032202_080 Hb_000224_150--Hb_032202_080 Hb_000371_010 Hb_000371_010 Hb_000224_150--Hb_000371_010 Hb_003186_020 Hb_003186_020 Hb_000224_150--Hb_003186_020 Hb_000640_160 Hb_000640_160 Hb_000224_150--Hb_000640_160 Hb_001153_210 Hb_001153_210 Hb_138435_010--Hb_001153_210 Hb_138435_010--Hb_003186_020 Hb_031284_010 Hb_031284_010 Hb_138435_010--Hb_031284_010 Hb_000847_080 Hb_000847_080 Hb_138435_010--Hb_000847_080 Hb_138435_010--Hb_032202_080 Hb_001226_150 Hb_001226_150 Hb_138435_010--Hb_001226_150 Hb_007044_110 Hb_007044_110 Hb_000457_230--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_000457_230--Hb_000205_260 Hb_000457_230--Hb_003186_020 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_000457_230--Hb_032202_080 Hb_002615_120 Hb_002615_120 Hb_032202_080--Hb_002615_120 Hb_001776_060 Hb_001776_060 Hb_032202_080--Hb_001776_060 Hb_008568_020 Hb_008568_020 Hb_032202_080--Hb_008568_020 Hb_001405_190 Hb_001405_190 Hb_032202_080--Hb_001405_190 Hb_128548_010 Hb_128548_010 Hb_000371_010--Hb_128548_010 Hb_000002_120 Hb_000002_120 Hb_000371_010--Hb_000002_120 Hb_002326_110 Hb_002326_110 Hb_000371_010--Hb_002326_110 Hb_033642_040 Hb_033642_040 Hb_000371_010--Hb_033642_040 Hb_002311_310 Hb_002311_310 Hb_000371_010--Hb_002311_310 Hb_000373_080 Hb_000373_080 Hb_003186_020--Hb_000373_080 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_003186_020--Hb_031284_010 Hb_000214_050 Hb_000214_050 Hb_003186_020--Hb_000214_050 Hb_000115_280 Hb_000115_280 Hb_003186_020--Hb_000115_280 Hb_003225_020 Hb_003225_020 Hb_000640_160--Hb_003225_020 Hb_005731_110 Hb_005731_110 Hb_000640_160--Hb_005731_110 Hb_001619_050 Hb_001619_050 Hb_000640_160--Hb_001619_050 Hb_000640_160--Hb_032202_080 Hb_004096_240 Hb_004096_240 Hb_000640_160--Hb_004096_240 Hb_000640_160--Hb_138435_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.77406 4.60662 9.53044 3.02967 3.99907 5.15302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.03819 2.30869 3.08817 4.0857 5.80581

CAGE analysis