Hb_000002_120

Information

Type -
Description -
Location Contig2: 249151-252242
Sequence    

Annotation

kegg
ID vvi:100251064
description activating signal cointegrator 1-like
nr
ID XP_012462001.1
description PREDICTED: uncharacterized protein LOC105782064 [Gossypium raimondii]
swissprot
ID Q9QXN3
description Activating signal cointegrator 1 OS=Mus musculus GN=Trip4 PE=1 SV=2
trembl
ID A0A0D2SGG3
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G187000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20074: 249480-249759 , PASA_asmbl_20075: 250389-250533 , PASA_asmbl_20077: 251375-252211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_120 0.0 - - PREDICTED: uncharacterized protein LOC105782064 [Gossypium raimondii]
2 Hb_005975_010 0.07944766 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
3 Hb_003579_050 0.0841402501 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
4 Hb_000371_010 0.084761734 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
5 Hb_001662_040 0.0913320402 - - DNA helicase, putative [Ricinus communis]
6 Hb_034243_040 0.0939633444 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
7 Hb_000098_140 0.0967155343 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
8 Hb_002067_030 0.0970525787 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
9 Hb_000340_130 0.0972110228 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
10 Hb_029142_030 0.0976435987 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
11 Hb_002311_310 0.0988343005 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
12 Hb_000847_080 0.1054994943 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
13 Hb_011249_030 0.1085917786 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
14 Hb_013394_030 0.1094652905 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
15 Hb_163591_010 0.1109562495 - - PREDICTED: amidase 1-like isoform X2 [Populus euphratica]
16 Hb_004128_200 0.111986249 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
17 Hb_003943_050 0.1127087883 - - phosphoglucomutase, putative [Ricinus communis]
18 Hb_000287_050 0.1137589629 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
19 Hb_005649_100 0.1137860488 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
20 Hb_002316_070 0.1149177925 - - PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000002_120 Hb_000002_120 Hb_005975_010 Hb_005975_010 Hb_000002_120--Hb_005975_010 Hb_003579_050 Hb_003579_050 Hb_000002_120--Hb_003579_050 Hb_000371_010 Hb_000371_010 Hb_000002_120--Hb_000371_010 Hb_001662_040 Hb_001662_040 Hb_000002_120--Hb_001662_040 Hb_034243_040 Hb_034243_040 Hb_000002_120--Hb_034243_040 Hb_000098_140 Hb_000098_140 Hb_000002_120--Hb_000098_140 Hb_029142_030 Hb_029142_030 Hb_005975_010--Hb_029142_030 Hb_005975_010--Hb_003579_050 Hb_000340_130 Hb_000340_130 Hb_005975_010--Hb_000340_130 Hb_000224_150 Hb_000224_150 Hb_005975_010--Hb_000224_150 Hb_065755_030 Hb_065755_030 Hb_005975_010--Hb_065755_030 Hb_000260_680 Hb_000260_680 Hb_003579_050--Hb_000260_680 Hb_004128_200 Hb_004128_200 Hb_003579_050--Hb_004128_200 Hb_027073_030 Hb_027073_030 Hb_003579_050--Hb_027073_030 Hb_001776_060 Hb_001776_060 Hb_003579_050--Hb_001776_060 Hb_000107_030 Hb_000107_030 Hb_003579_050--Hb_000107_030 Hb_027472_120 Hb_027472_120 Hb_003579_050--Hb_027472_120 Hb_128548_010 Hb_128548_010 Hb_000371_010--Hb_128548_010 Hb_000371_010--Hb_000224_150 Hb_002326_110 Hb_002326_110 Hb_000371_010--Hb_002326_110 Hb_033642_040 Hb_033642_040 Hb_000371_010--Hb_033642_040 Hb_002311_310 Hb_002311_310 Hb_000371_010--Hb_002311_310 Hb_163591_010 Hb_163591_010 Hb_001662_040--Hb_163591_010 Hb_000023_320 Hb_000023_320 Hb_001662_040--Hb_000023_320 Hb_002067_030 Hb_002067_030 Hb_001662_040--Hb_002067_030 Hb_001662_040--Hb_000371_010 Hb_001662_040--Hb_000098_140 Hb_001089_070 Hb_001089_070 Hb_034243_040--Hb_001089_070 Hb_034243_040--Hb_002311_310 Hb_000847_080 Hb_000847_080 Hb_034243_040--Hb_000847_080 Hb_000563_420 Hb_000563_420 Hb_034243_040--Hb_000563_420 Hb_034243_040--Hb_000098_140 Hb_000098_140--Hb_002067_030 Hb_002615_120 Hb_002615_120 Hb_000098_140--Hb_002615_120 Hb_001636_050 Hb_001636_050 Hb_000098_140--Hb_001636_050 Hb_032202_080 Hb_032202_080 Hb_000098_140--Hb_032202_080 Hb_000457_230 Hb_000457_230 Hb_000098_140--Hb_000457_230 Hb_000098_140--Hb_000023_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.85316 2.67788 8.96211 2.5944 4.5667 2.92739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44888 2.53632 1.55244 3.8844 2.72342

CAGE analysis