Hb_029142_030

Information

Type rubber biosynthesis
Description Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Location Contig29142: 12579-18882
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23930g
description hypothetical protein
nr
ID BAF98292.1
description 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
swissprot
ID P69834
description 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ISPD PE=1 SV=1
trembl
ID A9ZN10
description 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Hevea brasiliensis GN=HbCMS PE=2 SV=1
Gene Ontology
ID GO:0050518
description 2-c-methyl-d-erythritol 4-phosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30546: 16709-17126 , PASA_asmbl_30547: 12869-18849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029142_030 0.0 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
2 Hb_005975_010 0.0744959626 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
3 Hb_011249_030 0.0873611279 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
4 Hb_000002_120 0.0976435987 - - PREDICTED: uncharacterized protein LOC105782064 [Gossypium raimondii]
5 Hb_002255_040 0.0977666544 - - PREDICTED: biotin synthase [Jatropha curcas]
6 Hb_000436_100 0.0988106927 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
7 Hb_000340_130 0.0988332791 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
8 Hb_065755_030 0.0988703808 - - -
9 Hb_000424_020 0.1038426853 - - Uncharacterized protein TCM_037386 [Theobroma cacao]
10 Hb_002870_020 0.1050561408 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
11 Hb_002232_190 0.1066348524 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000959_220 0.1074986666 - - zinc finger protein, putative [Ricinus communis]
13 Hb_005731_110 0.1079353817 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
14 Hb_006326_050 0.1083749758 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
15 Hb_015292_040 0.1101164502 - - PREDICTED: myb-like protein X [Jatropha curcas]
16 Hb_003579_050 0.1108427994 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
17 Hb_000287_050 0.1125306477 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
18 Hb_000175_590 0.1143781785 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
19 Hb_004128_200 0.1159177208 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
20 Hb_066967_020 0.1166681115 - - RAB6-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_029142_030 Hb_029142_030 Hb_005975_010 Hb_005975_010 Hb_029142_030--Hb_005975_010 Hb_011249_030 Hb_011249_030 Hb_029142_030--Hb_011249_030 Hb_000002_120 Hb_000002_120 Hb_029142_030--Hb_000002_120 Hb_002255_040 Hb_002255_040 Hb_029142_030--Hb_002255_040 Hb_000436_100 Hb_000436_100 Hb_029142_030--Hb_000436_100 Hb_000340_130 Hb_000340_130 Hb_029142_030--Hb_000340_130 Hb_003579_050 Hb_003579_050 Hb_005975_010--Hb_003579_050 Hb_005975_010--Hb_000002_120 Hb_005975_010--Hb_000340_130 Hb_000224_150 Hb_000224_150 Hb_005975_010--Hb_000224_150 Hb_065755_030 Hb_065755_030 Hb_005975_010--Hb_065755_030 Hb_000287_050 Hb_000287_050 Hb_011249_030--Hb_000287_050 Hb_039605_010 Hb_039605_010 Hb_011249_030--Hb_039605_010 Hb_001277_280 Hb_001277_280 Hb_011249_030--Hb_001277_280 Hb_004128_200 Hb_004128_200 Hb_011249_030--Hb_004128_200 Hb_011249_030--Hb_065755_030 Hb_000002_120--Hb_003579_050 Hb_000371_010 Hb_000371_010 Hb_000002_120--Hb_000371_010 Hb_001662_040 Hb_001662_040 Hb_000002_120--Hb_001662_040 Hb_034243_040 Hb_034243_040 Hb_000002_120--Hb_034243_040 Hb_000098_140 Hb_000098_140 Hb_000002_120--Hb_000098_140 Hb_006555_040 Hb_006555_040 Hb_002255_040--Hb_006555_040 Hb_002255_040--Hb_011249_030 Hb_028207_020 Hb_028207_020 Hb_002255_040--Hb_028207_020 Hb_003581_210 Hb_003581_210 Hb_002255_040--Hb_003581_210 Hb_000424_020 Hb_000424_020 Hb_002255_040--Hb_000424_020 Hb_000436_100--Hb_000424_020 Hb_000077_010 Hb_000077_010 Hb_000436_100--Hb_000077_010 Hb_001930_030 Hb_001930_030 Hb_000436_100--Hb_001930_030 Hb_000003_300 Hb_000003_300 Hb_000436_100--Hb_000003_300 Hb_000436_100--Hb_002255_040 Hb_011386_050 Hb_011386_050 Hb_000340_130--Hb_011386_050 Hb_005649_100 Hb_005649_100 Hb_000340_130--Hb_005649_100 Hb_002686_080 Hb_002686_080 Hb_000340_130--Hb_002686_080 Hb_000012_270 Hb_000012_270 Hb_000340_130--Hb_000012_270 Hb_000340_130--Hb_000002_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2197 4.38847 23.1559 5.88015 10.2969 8.53584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.54322 5.81372 3.25193 4.51473 7.98533

CAGE analysis