Hb_003581_210

Information

Type transcription factor
Description TF Family: Whirly
Location Contig3581: 169986-173637
Sequence    

Annotation

kegg
ID rcu:RCOM_0697810
description hypothetical protein
nr
ID XP_012091932.1
description PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic [Jatropha curcas]
swissprot
ID Q66GR6
description Single-stranded DNA-binding protein WHY3, chloroplastic OS=Arabidopsis thaliana GN=WHY3 PE=1 SV=1
trembl
ID A0A067JBQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21692 PE=4 SV=1
Gene Ontology
ID GO:0003677
description single-stranded dna-binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_210 0.0 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic [Jatropha curcas]
2 Hb_011249_030 0.0971383474 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
3 Hb_000983_120 0.1040888123 - - cyclin-dependent protein kinase, putative [Ricinus communis]
4 Hb_002255_040 0.1043153579 - - PREDICTED: biotin synthase [Jatropha curcas]
5 Hb_028207_020 0.1060992506 - - PREDICTED: uncharacterized protein LOC105650315 isoform X2 [Jatropha curcas]
6 Hb_039605_010 0.1146477506 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
7 Hb_004128_200 0.1210989232 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
8 Hb_029142_030 0.1220424769 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
9 Hb_002986_080 0.125029501 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
10 Hb_000424_020 0.1257065733 - - Uncharacterized protein TCM_037386 [Theobroma cacao]
11 Hb_000436_100 0.1278625371 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
12 Hb_000287_050 0.1300102589 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
13 Hb_006326_050 0.1327794467 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
14 Hb_005975_010 0.1344501203 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
15 Hb_010367_030 0.1373230266 - - conserved hypothetical protein [Ricinus communis]
16 Hb_065755_030 0.1396099373 - - -
17 Hb_007313_090 0.1400905965 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002928_010 0.1423569931 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
19 Hb_178968_140 0.1426751037 - - PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_027073_030 0.1440362508 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]

Gene co-expression network

sample Hb_003581_210 Hb_003581_210 Hb_011249_030 Hb_011249_030 Hb_003581_210--Hb_011249_030 Hb_000983_120 Hb_000983_120 Hb_003581_210--Hb_000983_120 Hb_002255_040 Hb_002255_040 Hb_003581_210--Hb_002255_040 Hb_028207_020 Hb_028207_020 Hb_003581_210--Hb_028207_020 Hb_039605_010 Hb_039605_010 Hb_003581_210--Hb_039605_010 Hb_004128_200 Hb_004128_200 Hb_003581_210--Hb_004128_200 Hb_000287_050 Hb_000287_050 Hb_011249_030--Hb_000287_050 Hb_011249_030--Hb_039605_010 Hb_001277_280 Hb_001277_280 Hb_011249_030--Hb_001277_280 Hb_011249_030--Hb_004128_200 Hb_029142_030 Hb_029142_030 Hb_011249_030--Hb_029142_030 Hb_065755_030 Hb_065755_030 Hb_011249_030--Hb_065755_030 Hb_000983_120--Hb_039605_010 Hb_000042_340 Hb_000042_340 Hb_000983_120--Hb_000042_340 Hb_003994_140 Hb_003994_140 Hb_000983_120--Hb_003994_140 Hb_002928_010 Hb_002928_010 Hb_000983_120--Hb_002928_010 Hb_000525_100 Hb_000525_100 Hb_000983_120--Hb_000525_100 Hb_027073_030 Hb_027073_030 Hb_000983_120--Hb_027073_030 Hb_006555_040 Hb_006555_040 Hb_002255_040--Hb_006555_040 Hb_002255_040--Hb_029142_030 Hb_002255_040--Hb_011249_030 Hb_002255_040--Hb_028207_020 Hb_000424_020 Hb_000424_020 Hb_002255_040--Hb_000424_020 Hb_006326_050 Hb_006326_050 Hb_028207_020--Hb_006326_050 Hb_010367_030 Hb_010367_030 Hb_028207_020--Hb_010367_030 Hb_028207_020--Hb_065755_030 Hb_028207_020--Hb_011249_030 Hb_039605_010--Hb_002928_010 Hb_039605_010--Hb_000287_050 Hb_039605_010--Hb_003994_140 Hb_000563_330 Hb_000563_330 Hb_039605_010--Hb_000563_330 Hb_003579_050 Hb_003579_050 Hb_004128_200--Hb_003579_050 Hb_004128_200--Hb_027073_030 Hb_001005_020 Hb_001005_020 Hb_004128_200--Hb_001005_020 Hb_004128_200--Hb_001277_280 Hb_004128_200--Hb_039605_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.4536 53.4517 177.196 39.9579 48.5439 81.9104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.6422 43.7692 20.7126 19.8134 35.505

CAGE analysis