Hb_000287_050

Information

Type -
Description -
Location Contig287: 51660-53905
Sequence    

Annotation

kegg
ID rcu:RCOM_0864500
description hypothetical protein
nr
ID XP_012076237.1
description PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KH61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12671 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29909: 51682-52587 , PASA_asmbl_29910: 53025-53162 , PASA_asmbl_29911: 53523-53940
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000287_050 0.0 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
2 Hb_011249_030 0.0564565556 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
3 Hb_039605_010 0.0646479734 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
4 Hb_000139_190 0.0799486247 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
5 Hb_065755_030 0.0866539842 - - -
6 Hb_002928_010 0.0876805669 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
7 Hb_008921_010 0.0899097338 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
8 Hb_002232_190 0.09586801 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002054_050 0.0976879718 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
10 Hb_010998_040 0.0988156076 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
11 Hb_000959_230 0.1004935473 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
12 Hb_001005_020 0.1008814428 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
13 Hb_000983_120 0.1016983818 - - cyclin-dependent protein kinase, putative [Ricinus communis]
14 Hb_000959_220 0.1037598875 - - zinc finger protein, putative [Ricinus communis]
15 Hb_003994_140 0.1040418627 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010362_030 0.1054719979 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
17 Hb_003579_050 0.1056579844 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
18 Hb_004128_200 0.1073622742 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
19 Hb_000525_100 0.1075821402 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
20 Hb_027073_030 0.1082014525 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]

Gene co-expression network

sample Hb_000287_050 Hb_000287_050 Hb_011249_030 Hb_011249_030 Hb_000287_050--Hb_011249_030 Hb_039605_010 Hb_039605_010 Hb_000287_050--Hb_039605_010 Hb_000139_190 Hb_000139_190 Hb_000287_050--Hb_000139_190 Hb_065755_030 Hb_065755_030 Hb_000287_050--Hb_065755_030 Hb_002928_010 Hb_002928_010 Hb_000287_050--Hb_002928_010 Hb_008921_010 Hb_008921_010 Hb_000287_050--Hb_008921_010 Hb_011249_030--Hb_039605_010 Hb_001277_280 Hb_001277_280 Hb_011249_030--Hb_001277_280 Hb_004128_200 Hb_004128_200 Hb_011249_030--Hb_004128_200 Hb_029142_030 Hb_029142_030 Hb_011249_030--Hb_029142_030 Hb_011249_030--Hb_065755_030 Hb_039605_010--Hb_002928_010 Hb_000983_120 Hb_000983_120 Hb_039605_010--Hb_000983_120 Hb_003994_140 Hb_003994_140 Hb_039605_010--Hb_003994_140 Hb_000563_330 Hb_000563_330 Hb_039605_010--Hb_000563_330 Hb_027073_030 Hb_027073_030 Hb_000139_190--Hb_027073_030 Hb_010998_040 Hb_010998_040 Hb_000139_190--Hb_010998_040 Hb_000139_190--Hb_039605_010 Hb_032264_060 Hb_032264_060 Hb_000139_190--Hb_032264_060 Hb_010362_030 Hb_010362_030 Hb_000139_190--Hb_010362_030 Hb_178968_140 Hb_178968_140 Hb_065755_030--Hb_178968_140 Hb_001328_030 Hb_001328_030 Hb_065755_030--Hb_001328_030 Hb_003760_030 Hb_003760_030 Hb_065755_030--Hb_003760_030 Hb_005731_110 Hb_005731_110 Hb_065755_030--Hb_005731_110 Hb_000959_220 Hb_000959_220 Hb_065755_030--Hb_000959_220 Hb_001776_060 Hb_001776_060 Hb_065755_030--Hb_001776_060 Hb_002928_010--Hb_003994_140 Hb_002928_010--Hb_027073_030 Hb_058972_010 Hb_058972_010 Hb_002928_010--Hb_058972_010 Hb_000414_050 Hb_000414_050 Hb_002928_010--Hb_000414_050 Hb_001418_040 Hb_001418_040 Hb_002928_010--Hb_001418_040 Hb_002054_050 Hb_002054_050 Hb_008921_010--Hb_002054_050 Hb_000959_230 Hb_000959_230 Hb_008921_010--Hb_000959_230 Hb_002942_210 Hb_002942_210 Hb_008921_010--Hb_002942_210 Hb_000589_190 Hb_000589_190 Hb_008921_010--Hb_000589_190 Hb_001804_110 Hb_001804_110 Hb_008921_010--Hb_001804_110 Hb_139002_010 Hb_139002_010 Hb_008921_010--Hb_139002_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.074 14.6375 34.2438 13.1757 20.8012 11.7826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.43796 9.83419 7.85383 6.45156 9.67684

CAGE analysis