Hb_178968_140

Information

Type -
Description -
Location Contig178968: 121927-131885
Sequence    

Annotation

kegg
ID pop:POPTR_0001s07440g
description POPTRDRAFT_1065652; hypothetical protein
nr
ID XP_012067434.1
description PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID O98997
description Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Vigna radiata var. radiata GN=RCA PE=2 SV=2
trembl
ID B9GLS2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07440g PE=4 SV=1
Gene Ontology
ID GO:0009507
description ribulose bisphosphate carboxylase oxygenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17267: 121950-131890 , PASA_asmbl_17268: 130855-131811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178968_140 0.0 - - PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_065755_030 0.0707997624 - - -
3 Hb_000663_020 0.0854193354 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
4 Hb_001328_030 0.0863258265 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
5 Hb_005731_110 0.0867882289 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
6 Hb_001541_050 0.0927184309 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
7 Hb_000640_160 0.0960909145 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
8 Hb_000300_670 0.1020279081 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
9 Hb_006326_050 0.1035253076 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
10 Hb_032202_080 0.1070442806 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
11 Hb_002870_020 0.1074745084 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
12 Hb_010367_030 0.1074749175 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001195_270 0.1080209072 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
14 Hb_003225_020 0.1100493421 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
15 Hb_028207_020 0.111603701 - - PREDICTED: uncharacterized protein LOC105650315 isoform X2 [Jatropha curcas]
16 Hb_001776_210 0.1116692819 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_000085_190 0.1142672378 - - FtsZ1 protein [Manihot esculenta]
18 Hb_077026_010 0.1161925192 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
19 Hb_000120_210 0.1163527285 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
20 Hb_000436_100 0.1175811009 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]

Gene co-expression network

sample Hb_178968_140 Hb_178968_140 Hb_065755_030 Hb_065755_030 Hb_178968_140--Hb_065755_030 Hb_000663_020 Hb_000663_020 Hb_178968_140--Hb_000663_020 Hb_001328_030 Hb_001328_030 Hb_178968_140--Hb_001328_030 Hb_005731_110 Hb_005731_110 Hb_178968_140--Hb_005731_110 Hb_001541_050 Hb_001541_050 Hb_178968_140--Hb_001541_050 Hb_000640_160 Hb_000640_160 Hb_178968_140--Hb_000640_160 Hb_065755_030--Hb_001328_030 Hb_003760_030 Hb_003760_030 Hb_065755_030--Hb_003760_030 Hb_065755_030--Hb_005731_110 Hb_000959_220 Hb_000959_220 Hb_065755_030--Hb_000959_220 Hb_001776_060 Hb_001776_060 Hb_065755_030--Hb_001776_060 Hb_000663_020--Hb_005731_110 Hb_002218_020 Hb_002218_020 Hb_000663_020--Hb_002218_020 Hb_001195_270 Hb_001195_270 Hb_000663_020--Hb_001195_270 Hb_077026_010 Hb_077026_010 Hb_000663_020--Hb_077026_010 Hb_005162_110 Hb_005162_110 Hb_000663_020--Hb_005162_110 Hb_003506_030 Hb_003506_030 Hb_000663_020--Hb_003506_030 Hb_003861_070 Hb_003861_070 Hb_001328_030--Hb_003861_070 Hb_001328_030--Hb_005731_110 Hb_010367_030 Hb_010367_030 Hb_001328_030--Hb_010367_030 Hb_000105_050 Hb_000105_050 Hb_001328_030--Hb_000105_050 Hb_005731_110--Hb_000640_160 Hb_005731_110--Hb_000959_220 Hb_005731_110--Hb_005162_110 Hb_003225_020 Hb_003225_020 Hb_005731_110--Hb_003225_020 Hb_065525_080 Hb_065525_080 Hb_001541_050--Hb_065525_080 Hb_005494_010 Hb_005494_010 Hb_001541_050--Hb_005494_010 Hb_093666_010 Hb_093666_010 Hb_001541_050--Hb_093666_010 Hb_004096_240 Hb_004096_240 Hb_001541_050--Hb_004096_240 Hb_001623_270 Hb_001623_270 Hb_001541_050--Hb_001623_270 Hb_002876_300 Hb_002876_300 Hb_001541_050--Hb_002876_300 Hb_000640_160--Hb_003225_020 Hb_001619_050 Hb_001619_050 Hb_000640_160--Hb_001619_050 Hb_032202_080 Hb_032202_080 Hb_000640_160--Hb_032202_080 Hb_000640_160--Hb_004096_240 Hb_138435_010 Hb_138435_010 Hb_000640_160--Hb_138435_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1197 12.9403 30.6962 13.3469 11.5312 12.3935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.42023 12.861 3.91877 5.42062 18.3037

CAGE analysis