Hb_001328_030

Information

Type -
Description -
Location Contig1328: 21038-26432
Sequence    

Annotation

kegg
ID fve:101302852
description nucleobase-ascorbate transporter 1-like
nr
ID XP_012080636.1
description PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
swissprot
ID Q9SHZ3
description Nucleobase-ascorbate transporter 1 OS=Arabidopsis thaliana GN=NAT1 PE=2 SV=1
trembl
ID A0A067K720
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13746 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleobase-ascorbate transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09309: 21921-24505 , PASA_asmbl_09310: 22587-22891 , PASA_asmbl_09311: 26090-26321
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001328_030 0.0 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
2 Hb_065755_030 0.0723963137 - - -
3 Hb_178968_140 0.0863258265 - - PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_003861_070 0.0925757323 - - PREDICTED: uncharacterized protein LOC105650781 [Jatropha curcas]
5 Hb_005731_110 0.1066610664 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
6 Hb_010367_030 0.1075862173 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000105_050 0.1079409998 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
8 Hb_000300_670 0.1082763456 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
9 Hb_002874_180 0.1107933277 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
10 Hb_000663_020 0.1125701347 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
11 Hb_002284_150 0.1132397828 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
12 Hb_010098_020 0.1173340409 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_003760_030 0.1174053173 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
14 Hb_028207_020 0.1183486076 - - PREDICTED: uncharacterized protein LOC105650315 isoform X2 [Jatropha curcas]
15 Hb_000640_160 0.1215260525 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
16 Hb_006816_100 0.1231976248 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
17 Hb_001699_210 0.123385226 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform X1 [Jatropha curcas]
18 Hb_000181_090 0.123733453 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
19 Hb_077026_010 0.1249994174 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
20 Hb_000959_220 0.125280916 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001328_030 Hb_001328_030 Hb_065755_030 Hb_065755_030 Hb_001328_030--Hb_065755_030 Hb_178968_140 Hb_178968_140 Hb_001328_030--Hb_178968_140 Hb_003861_070 Hb_003861_070 Hb_001328_030--Hb_003861_070 Hb_005731_110 Hb_005731_110 Hb_001328_030--Hb_005731_110 Hb_010367_030 Hb_010367_030 Hb_001328_030--Hb_010367_030 Hb_000105_050 Hb_000105_050 Hb_001328_030--Hb_000105_050 Hb_065755_030--Hb_178968_140 Hb_003760_030 Hb_003760_030 Hb_065755_030--Hb_003760_030 Hb_065755_030--Hb_005731_110 Hb_000959_220 Hb_000959_220 Hb_065755_030--Hb_000959_220 Hb_001776_060 Hb_001776_060 Hb_065755_030--Hb_001776_060 Hb_000663_020 Hb_000663_020 Hb_178968_140--Hb_000663_020 Hb_178968_140--Hb_005731_110 Hb_001541_050 Hb_001541_050 Hb_178968_140--Hb_001541_050 Hb_000640_160 Hb_000640_160 Hb_178968_140--Hb_000640_160 Hb_003861_070--Hb_065755_030 Hb_003861_070--Hb_178968_140 Hb_000390_310 Hb_000390_310 Hb_003861_070--Hb_000390_310 Hb_000287_050 Hb_000287_050 Hb_003861_070--Hb_000287_050 Hb_029142_030 Hb_029142_030 Hb_003861_070--Hb_029142_030 Hb_005731_110--Hb_000640_160 Hb_005731_110--Hb_000663_020 Hb_005731_110--Hb_000959_220 Hb_005162_110 Hb_005162_110 Hb_005731_110--Hb_005162_110 Hb_003225_020 Hb_003225_020 Hb_005731_110--Hb_003225_020 Hb_028207_020 Hb_028207_020 Hb_010367_030--Hb_028207_020 Hb_010367_030--Hb_178968_140 Hb_002986_080 Hb_002986_080 Hb_010367_030--Hb_002986_080 Hb_010367_030--Hb_003861_070 Hb_010367_030--Hb_065755_030 Hb_000181_090 Hb_000181_090 Hb_000105_050--Hb_000181_090 Hb_004440_020 Hb_004440_020 Hb_000105_050--Hb_004440_020 Hb_002284_150 Hb_002284_150 Hb_000105_050--Hb_002284_150 Hb_003077_020 Hb_003077_020 Hb_000105_050--Hb_003077_020 Hb_000422_030 Hb_000422_030 Hb_000105_050--Hb_000422_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62136 0.845705 2.67715 1.379 1.07585 0.810884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.12746 1.14917 0.533483 0.264997 1.35855

CAGE analysis