Hb_000390_310

Information

Type -
Description -
Location Contig390: 318760-321558
Sequence    

Annotation

kegg
ID rcu:RCOM_1326970
description ATP binding protein, putative
nr
ID XP_012070228.1
description PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S235
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1326970 PE=4 SV=1
Gene Ontology
ID GO:0009507
description serine threonine-protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39135: 319513-319841 , PASA_asmbl_39136: 318784-321501 , PASA_asmbl_39137: 320472-321516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_310 0.0 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
2 Hb_000948_180 0.0850145777 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
3 Hb_032202_230 0.0909075584 - - peroxisomal biogenesis factor, putative [Ricinus communis]
4 Hb_004951_070 0.0928356056 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
5 Hb_000175_590 0.0970881885 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
6 Hb_001652_080 0.0980370318 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
7 Hb_001213_130 0.1110005304 - - PREDICTED: fructokinase-like 1, chloroplastic [Jatropha curcas]
8 Hb_000390_130 0.1120562608 - - PREDICTED: dnaJ protein ERDJ3B isoform X2 [Jatropha curcas]
9 Hb_007101_160 0.1205589769 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000436_100 0.1207122416 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
11 Hb_007313_090 0.1207206494 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000243_200 0.1215619655 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000576_050 0.1220331998 - - Kinase superfamily protein [Theobroma cacao]
14 Hb_003861_070 0.1225306691 - - PREDICTED: uncharacterized protein LOC105650781 [Jatropha curcas]
15 Hb_000958_130 0.1234205911 - - PREDICTED: uncharacterized protein LOC105628716 isoform X1 [Jatropha curcas]
16 Hb_001956_040 0.1259482783 - - PREDICTED: PGR5-like protein 1B, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000424_020 0.1292856435 - - Uncharacterized protein TCM_037386 [Theobroma cacao]
18 Hb_001357_090 0.1315247841 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
19 Hb_029142_030 0.1332247539 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
20 Hb_005975_010 0.1350167676 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000390_310 Hb_000390_310 Hb_000948_180 Hb_000948_180 Hb_000390_310--Hb_000948_180 Hb_032202_230 Hb_032202_230 Hb_000390_310--Hb_032202_230 Hb_004951_070 Hb_004951_070 Hb_000390_310--Hb_004951_070 Hb_000175_590 Hb_000175_590 Hb_000390_310--Hb_000175_590 Hb_001652_080 Hb_001652_080 Hb_000390_310--Hb_001652_080 Hb_001213_130 Hb_001213_130 Hb_000390_310--Hb_001213_130 Hb_000390_130 Hb_000390_130 Hb_000948_180--Hb_000390_130 Hb_000948_180--Hb_032202_230 Hb_005695_060 Hb_005695_060 Hb_000948_180--Hb_005695_060 Hb_003142_070 Hb_003142_070 Hb_000948_180--Hb_003142_070 Hb_000948_180--Hb_001652_080 Hb_032202_230--Hb_001652_080 Hb_000368_020 Hb_000368_020 Hb_032202_230--Hb_000368_020 Hb_006452_160 Hb_006452_160 Hb_032202_230--Hb_006452_160 Hb_000576_050 Hb_000576_050 Hb_032202_230--Hb_000576_050 Hb_003994_200 Hb_003994_200 Hb_032202_230--Hb_003994_200 Hb_000042_340 Hb_000042_340 Hb_032202_230--Hb_000042_340 Hb_002093_030 Hb_002093_030 Hb_004951_070--Hb_002093_030 Hb_004951_070--Hb_000175_590 Hb_004951_070--Hb_032202_230 Hb_007044_040 Hb_007044_040 Hb_004951_070--Hb_007044_040 Hb_000243_200 Hb_000243_200 Hb_004951_070--Hb_000243_200 Hb_065525_130 Hb_065525_130 Hb_000175_590--Hb_065525_130 Hb_000175_590--Hb_001652_080 Hb_000175_590--Hb_032202_230 Hb_005276_130 Hb_005276_130 Hb_000175_590--Hb_005276_130 Hb_001652_080--Hb_000042_340 Hb_007904_120 Hb_007904_120 Hb_001652_080--Hb_007904_120 Hb_001652_080--Hb_003994_200 Hb_007007_060 Hb_007007_060 Hb_001652_080--Hb_007007_060 Hb_000227_250 Hb_000227_250 Hb_001652_080--Hb_000227_250 Hb_001213_130--Hb_001652_080 Hb_000963_130 Hb_000963_130 Hb_001213_130--Hb_000963_130 Hb_000076_260 Hb_000076_260 Hb_001213_130--Hb_000076_260 Hb_001213_130--Hb_032202_230 Hb_000077_010 Hb_000077_010 Hb_001213_130--Hb_000077_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.7598 18.4315 59.5591 9.75162 44.3522 33.3306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3904 21.9958 13.3476 8.05039 27.4554

CAGE analysis