Hb_004951_070

Information

Type desease resistance
Description Gene Name: AAA
Location Contig4951: 62818-70897
Sequence    

Annotation

kegg
ID rcu:RCOM_0867920
description Stage III sporulation protein AA, putative
nr
ID XP_002519947.1
description Stage III sporulation protein AA, putative [Ricinus communis]
swissprot
ID P51281
description Uncharacterized protein ycf45 OS=Porphyra purpurea GN=ycf45 PE=3 SV=1
trembl
ID B9S1T2
description Stage III sporulation protein AA, putative OS=Ricinus communis GN=RCOM_0867920 PE=4 SV=1
Gene Ontology
ID GO:0009507
description stage iii sporulation protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45438: 66798-70673 , PASA_asmbl_45439: 62758-70951 , PASA_asmbl_45440: 67841-70659
cDNA
(Sanger)
(ID:Location)		 048_J19.ab1: 67282-70951

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004951_070 0.0 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
2 Hb_002093_030 0.0870726951 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
3 Hb_000175_590 0.089162664 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
4 Hb_032202_230 0.0924188338 - - peroxisomal biogenesis factor, putative [Ricinus communis]
5 Hb_000390_310 0.0928356056 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
6 Hb_007044_040 0.099012353 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
7 Hb_000243_200 0.1031371275 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001652_080 0.1063371006 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
9 Hb_001983_030 0.1064964314 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
10 Hb_022693_030 0.1117620916 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
11 Hb_008556_030 0.112062683 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
12 Hb_000367_130 0.1136490907 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007007_060 0.1144438523 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
14 Hb_000700_150 0.1145579666 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001213_130 0.114928595 - - PREDICTED: fructokinase-like 1, chloroplastic [Jatropha curcas]
16 Hb_162286_010 0.1153024479 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
17 Hb_000390_130 0.1155155591 - - PREDICTED: dnaJ protein ERDJ3B isoform X2 [Jatropha curcas]
18 Hb_000948_180 0.1162538962 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
19 Hb_000665_160 0.1166315947 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
20 Hb_000134_310 0.1169820854 - - PREDICTED: protein gamma response 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004951_070 Hb_004951_070 Hb_002093_030 Hb_002093_030 Hb_004951_070--Hb_002093_030 Hb_000175_590 Hb_000175_590 Hb_004951_070--Hb_000175_590 Hb_032202_230 Hb_032202_230 Hb_004951_070--Hb_032202_230 Hb_000390_310 Hb_000390_310 Hb_004951_070--Hb_000390_310 Hb_007044_040 Hb_007044_040 Hb_004951_070--Hb_007044_040 Hb_000243_200 Hb_000243_200 Hb_004951_070--Hb_000243_200 Hb_002749_110 Hb_002749_110 Hb_002093_030--Hb_002749_110 Hb_003126_100 Hb_003126_100 Hb_002093_030--Hb_003126_100 Hb_022693_030 Hb_022693_030 Hb_002093_030--Hb_022693_030 Hb_000152_260 Hb_000152_260 Hb_002093_030--Hb_000152_260 Hb_008556_030 Hb_008556_030 Hb_002093_030--Hb_008556_030 Hb_001828_160 Hb_001828_160 Hb_002093_030--Hb_001828_160 Hb_000175_590--Hb_000390_310 Hb_065525_130 Hb_065525_130 Hb_000175_590--Hb_065525_130 Hb_001652_080 Hb_001652_080 Hb_000175_590--Hb_001652_080 Hb_000175_590--Hb_032202_230 Hb_005276_130 Hb_005276_130 Hb_000175_590--Hb_005276_130 Hb_032202_230--Hb_001652_080 Hb_000368_020 Hb_000368_020 Hb_032202_230--Hb_000368_020 Hb_006452_160 Hb_006452_160 Hb_032202_230--Hb_006452_160 Hb_000576_050 Hb_000576_050 Hb_032202_230--Hb_000576_050 Hb_003994_200 Hb_003994_200 Hb_032202_230--Hb_003994_200 Hb_000042_340 Hb_000042_340 Hb_032202_230--Hb_000042_340 Hb_000948_180 Hb_000948_180 Hb_000390_310--Hb_000948_180 Hb_000390_310--Hb_032202_230 Hb_000390_310--Hb_001652_080 Hb_001213_130 Hb_001213_130 Hb_000390_310--Hb_001213_130 Hb_001102_080 Hb_001102_080 Hb_007044_040--Hb_001102_080 Hb_007044_040--Hb_003126_100 Hb_007044_040--Hb_002093_030 Hb_000480_010 Hb_000480_010 Hb_007044_040--Hb_000480_010 Hb_011915_010 Hb_011915_010 Hb_007044_040--Hb_011915_010 Hb_002888_070 Hb_002888_070 Hb_007044_040--Hb_002888_070 Hb_000243_200--Hb_032202_230 Hb_000243_200--Hb_000576_050 Hb_007313_090 Hb_007313_090 Hb_000243_200--Hb_007313_090 Hb_001427_050 Hb_001427_050 Hb_000243_200--Hb_001427_050 Hb_000243_200--Hb_000390_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5869 4.66483 13.5764 4.20757 15.2228 13.6471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.73666 7.05591 3.45922 4.48186 10.5419

CAGE analysis