Hb_000175_590

Information

Type -
Description -
Location Contig175: 404389-412462
Sequence    

Annotation

kegg
ID pop:POPTR_0001s17270g
description POPTRDRAFT_838715; hypothetical protein
nr
ID XP_012073227.1
description PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
swissprot
ID Q06881
description Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accB PE=1 SV=2
trembl
ID A0A067KLU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06178 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16743: 404412-412428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_590 0.0 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
2 Hb_004951_070 0.089162664 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
3 Hb_000390_310 0.0970881885 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
4 Hb_065525_130 0.1044139949 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
5 Hb_001652_080 0.1105287162 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
6 Hb_032202_230 0.1130515834 - - peroxisomal biogenesis factor, putative [Ricinus communis]
7 Hb_005276_130 0.1139062445 - - conserved hypothetical protein [Ricinus communis]
8 Hb_029142_030 0.1143781785 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
9 Hb_000436_100 0.1176096472 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
10 Hb_000700_150 0.1209920274 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002304_060 0.1211607177 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
12 Hb_000085_140 0.1211731452 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
13 Hb_048141_030 0.1219376518 - - PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
14 Hb_000156_160 0.1242684582 - - PREDICTED: urease accessory protein G [Jatropha curcas]
15 Hb_001213_130 0.1260147078 - - PREDICTED: fructokinase-like 1, chloroplastic [Jatropha curcas]
16 Hb_001105_050 0.126203635 - - PREDICTED: uncharacterized protein LOC105642744 isoform X1 [Jatropha curcas]
17 Hb_008206_060 0.1264940559 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_002769_020 0.1267265622 - - DNA-damage-inducible protein f, putative [Ricinus communis]
19 Hb_000243_200 0.1283656371 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003462_070 0.1285467482 - - arsenical pump-driving atpase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000175_590 Hb_000175_590 Hb_004951_070 Hb_004951_070 Hb_000175_590--Hb_004951_070 Hb_000390_310 Hb_000390_310 Hb_000175_590--Hb_000390_310 Hb_065525_130 Hb_065525_130 Hb_000175_590--Hb_065525_130 Hb_001652_080 Hb_001652_080 Hb_000175_590--Hb_001652_080 Hb_032202_230 Hb_032202_230 Hb_000175_590--Hb_032202_230 Hb_005276_130 Hb_005276_130 Hb_000175_590--Hb_005276_130 Hb_002093_030 Hb_002093_030 Hb_004951_070--Hb_002093_030 Hb_004951_070--Hb_032202_230 Hb_004951_070--Hb_000390_310 Hb_007044_040 Hb_007044_040 Hb_004951_070--Hb_007044_040 Hb_000243_200 Hb_000243_200 Hb_004951_070--Hb_000243_200 Hb_000948_180 Hb_000948_180 Hb_000390_310--Hb_000948_180 Hb_000390_310--Hb_032202_230 Hb_000390_310--Hb_001652_080 Hb_001213_130 Hb_001213_130 Hb_000390_310--Hb_001213_130 Hb_000085_140 Hb_000085_140 Hb_065525_130--Hb_000085_140 Hb_012098_150 Hb_012098_150 Hb_065525_130--Hb_012098_150 Hb_002870_020 Hb_002870_020 Hb_065525_130--Hb_002870_020 Hb_001105_050 Hb_001105_050 Hb_065525_130--Hb_001105_050 Hb_001619_050 Hb_001619_050 Hb_065525_130--Hb_001619_050 Hb_008206_060 Hb_008206_060 Hb_065525_130--Hb_008206_060 Hb_001652_080--Hb_032202_230 Hb_000042_340 Hb_000042_340 Hb_001652_080--Hb_000042_340 Hb_007904_120 Hb_007904_120 Hb_001652_080--Hb_007904_120 Hb_003994_200 Hb_003994_200 Hb_001652_080--Hb_003994_200 Hb_007007_060 Hb_007007_060 Hb_001652_080--Hb_007007_060 Hb_000227_250 Hb_000227_250 Hb_001652_080--Hb_000227_250 Hb_000368_020 Hb_000368_020 Hb_032202_230--Hb_000368_020 Hb_006452_160 Hb_006452_160 Hb_032202_230--Hb_006452_160 Hb_000576_050 Hb_000576_050 Hb_032202_230--Hb_000576_050 Hb_032202_230--Hb_003994_200 Hb_032202_230--Hb_000042_340 Hb_158092_030 Hb_158092_030 Hb_005276_130--Hb_158092_030 Hb_003752_070 Hb_003752_070 Hb_005276_130--Hb_003752_070 Hb_001232_150 Hb_001232_150 Hb_005276_130--Hb_001232_150 Hb_021650_010 Hb_021650_010 Hb_005276_130--Hb_021650_010 Hb_005527_010 Hb_005527_010 Hb_005276_130--Hb_005527_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.9063 15.6393 54.1728 15.6445 35.3225 38.5458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.819 13.5975 9.13174 10.0449 35.4208

CAGE analysis