Hb_000948_180

Information

Type -
Description -
Location Contig948: 187280-190645
Sequence    

Annotation

kegg
ID rcu:RCOM_0517110
description hypothetical protein
nr
ID XP_012066499.1
description PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SRX9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0517110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63323: 182993-187762 , PASA_asmbl_63324: 187562-190776 , PASA_asmbl_63325: 189028-190679
cDNA
(Sanger)
(ID:Location)		 027_A16.ab1: 188737-190776 , 042_G09.ab1: 189028-190679

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000948_180 0.0 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
2 Hb_000390_130 0.0764794342 - - PREDICTED: dnaJ protein ERDJ3B isoform X2 [Jatropha curcas]
3 Hb_000390_310 0.0850145777 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
4 Hb_032202_230 0.0906674414 - - peroxisomal biogenesis factor, putative [Ricinus communis]
5 Hb_005695_060 0.1049313655 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
6 Hb_003142_070 0.1049340798 - - hypothetical protein F383_14657 [Gossypium arboreum]
7 Hb_001652_080 0.1157317455 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
8 Hb_004951_070 0.1162538962 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
9 Hb_000368_020 0.1204110598 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
10 Hb_000920_280 0.120680291 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
11 Hb_001427_050 0.121589993 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
12 Hb_000243_200 0.1230278804 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002783_120 0.1242554412 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
14 Hb_006824_060 0.1256968991 - - PREDICTED: uncharacterized protein LOC105650737 [Jatropha curcas]
15 Hb_001357_090 0.1261133503 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
16 Hb_002639_150 0.1269679323 - - -
17 Hb_003994_200 0.1278291266 - - PREDICTED: uncharacterized protein LOC105646142 [Jatropha curcas]
18 Hb_000926_310 0.1291823131 - - uncharacterized protein LOC100500241 [Glycine max]
19 Hb_000140_330 0.1298069724 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
20 Hb_000576_050 0.1319937504 - - Kinase superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000948_180 Hb_000948_180 Hb_000390_130 Hb_000390_130 Hb_000948_180--Hb_000390_130 Hb_000390_310 Hb_000390_310 Hb_000948_180--Hb_000390_310 Hb_032202_230 Hb_032202_230 Hb_000948_180--Hb_032202_230 Hb_005695_060 Hb_005695_060 Hb_000948_180--Hb_005695_060 Hb_003142_070 Hb_003142_070 Hb_000948_180--Hb_003142_070 Hb_001652_080 Hb_001652_080 Hb_000948_180--Hb_001652_080 Hb_002639_150 Hb_002639_150 Hb_000390_130--Hb_002639_150 Hb_001357_090 Hb_001357_090 Hb_000390_130--Hb_001357_090 Hb_027043_020 Hb_027043_020 Hb_000390_130--Hb_027043_020 Hb_001329_130 Hb_001329_130 Hb_000390_130--Hb_001329_130 Hb_000926_310 Hb_000926_310 Hb_000390_130--Hb_000926_310 Hb_000390_310--Hb_032202_230 Hb_004951_070 Hb_004951_070 Hb_000390_310--Hb_004951_070 Hb_000175_590 Hb_000175_590 Hb_000390_310--Hb_000175_590 Hb_000390_310--Hb_001652_080 Hb_001213_130 Hb_001213_130 Hb_000390_310--Hb_001213_130 Hb_032202_230--Hb_001652_080 Hb_000368_020 Hb_000368_020 Hb_032202_230--Hb_000368_020 Hb_006452_160 Hb_006452_160 Hb_032202_230--Hb_006452_160 Hb_000576_050 Hb_000576_050 Hb_032202_230--Hb_000576_050 Hb_003994_200 Hb_003994_200 Hb_032202_230--Hb_003994_200 Hb_000042_340 Hb_000042_340 Hb_032202_230--Hb_000042_340 Hb_002783_120 Hb_002783_120 Hb_005695_060--Hb_002783_120 Hb_001001_020 Hb_001001_020 Hb_005695_060--Hb_001001_020 Hb_000976_080 Hb_000976_080 Hb_005695_060--Hb_000976_080 Hb_000453_190 Hb_000453_190 Hb_005695_060--Hb_000453_190 Hb_152453_010 Hb_152453_010 Hb_005695_060--Hb_152453_010 Hb_005846_020 Hb_005846_020 Hb_005695_060--Hb_005846_020 Hb_000359_330 Hb_000359_330 Hb_003142_070--Hb_000359_330 Hb_006623_020 Hb_006623_020 Hb_003142_070--Hb_006623_020 Hb_003091_010 Hb_003091_010 Hb_003142_070--Hb_003091_010 Hb_000808_250 Hb_000808_250 Hb_003142_070--Hb_000808_250 Hb_001352_090 Hb_001352_090 Hb_003142_070--Hb_001352_090 Hb_000920_280 Hb_000920_280 Hb_003142_070--Hb_000920_280 Hb_001652_080--Hb_000042_340 Hb_007904_120 Hb_007904_120 Hb_001652_080--Hb_007904_120 Hb_001652_080--Hb_003994_200 Hb_007007_060 Hb_007007_060 Hb_001652_080--Hb_007007_060 Hb_000227_250 Hb_000227_250 Hb_001652_080--Hb_000227_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.0358 18.9569 40.1659 11.2054 43.0622 32.5703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0981 21.9009 10.2657 3.67636 17.5729

CAGE analysis