Hb_000576_050

Information

Type -
Description -
Location Contig576: 101358-106379
Sequence    

Annotation

kegg
ID tcc:TCM_037129
description Kinase superfamily protein
nr
ID XP_007012024.1
description Kinase superfamily protein [Theobroma cacao]
swissprot
ID P51568
description Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana GN=AFC3 PE=2 SV=2
trembl
ID A0A061GJR5
description Kinase superfamily protein OS=Theobroma cacao GN=TCM_037129 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase afc3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49667: 101464-104627 , PASA_asmbl_49669: 104900-105524 , PASA_asmbl_49671: 105898-106343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000576_050 0.0 - - Kinase superfamily protein [Theobroma cacao]
2 Hb_058972_010 0.0592326834 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
3 Hb_001418_040 0.0721539549 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
4 Hb_000649_070 0.0772659607 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
5 Hb_007313_090 0.078616343 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006960_050 0.0790483449 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
7 Hb_000260_100 0.0793847498 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003579_050 0.0803931214 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
9 Hb_000836_170 0.081149652 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
10 Hb_000260_680 0.0828678226 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
11 Hb_027073_030 0.0845024903 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
12 Hb_005288_150 0.0855449802 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
13 Hb_002928_010 0.0856415441 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
14 Hb_003878_110 0.085887719 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
15 Hb_000926_310 0.0870862302 - - uncharacterized protein LOC100500241 [Glycine max]
16 Hb_001195_260 0.0872526016 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
17 Hb_079526_030 0.0875340517 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
18 Hb_032202_230 0.088607034 - - peroxisomal biogenesis factor, putative [Ricinus communis]
19 Hb_162286_010 0.0886599954 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
20 Hb_000331_110 0.089684839 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_000576_050 Hb_000576_050 Hb_058972_010 Hb_058972_010 Hb_000576_050--Hb_058972_010 Hb_001418_040 Hb_001418_040 Hb_000576_050--Hb_001418_040 Hb_000649_070 Hb_000649_070 Hb_000576_050--Hb_000649_070 Hb_007313_090 Hb_007313_090 Hb_000576_050--Hb_007313_090 Hb_006960_050 Hb_006960_050 Hb_000576_050--Hb_006960_050 Hb_000260_100 Hb_000260_100 Hb_000576_050--Hb_000260_100 Hb_001195_260 Hb_001195_260 Hb_058972_010--Hb_001195_260 Hb_004122_040 Hb_004122_040 Hb_058972_010--Hb_004122_040 Hb_073973_130 Hb_073973_130 Hb_058972_010--Hb_073973_130 Hb_000107_190 Hb_000107_190 Hb_058972_010--Hb_000107_190 Hb_000610_010 Hb_000610_010 Hb_058972_010--Hb_000610_010 Hb_008556_030 Hb_008556_030 Hb_001418_040--Hb_008556_030 Hb_001418_040--Hb_006960_050 Hb_000101_380 Hb_000101_380 Hb_001418_040--Hb_000101_380 Hb_000414_050 Hb_000414_050 Hb_001418_040--Hb_000414_050 Hb_002836_140 Hb_002836_140 Hb_001418_040--Hb_002836_140 Hb_000649_070--Hb_006960_050 Hb_001329_130 Hb_001329_130 Hb_000649_070--Hb_001329_130 Hb_033153_070 Hb_033153_070 Hb_000649_070--Hb_033153_070 Hb_079526_030 Hb_079526_030 Hb_000649_070--Hb_079526_030 Hb_000334_270 Hb_000334_270 Hb_000649_070--Hb_000334_270 Hb_020367_050 Hb_020367_050 Hb_000649_070--Hb_020367_050 Hb_000926_180 Hb_000926_180 Hb_007313_090--Hb_000926_180 Hb_000836_170 Hb_000836_170 Hb_007313_090--Hb_000836_170 Hb_004785_190 Hb_004785_190 Hb_007313_090--Hb_004785_190 Hb_007313_090--Hb_058972_010 Hb_027043_020 Hb_027043_020 Hb_007313_090--Hb_027043_020 Hb_004055_150 Hb_004055_150 Hb_006960_050--Hb_004055_150 Hb_004785_100 Hb_004785_100 Hb_006960_050--Hb_004785_100 Hb_006620_020 Hb_006620_020 Hb_006960_050--Hb_006620_020 Hb_006960_050--Hb_020367_050 Hb_002686_250 Hb_002686_250 Hb_006960_050--Hb_002686_250 Hb_005288_150 Hb_005288_150 Hb_000260_100--Hb_005288_150 Hb_002997_080 Hb_002997_080 Hb_000260_100--Hb_002997_080 Hb_000236_240 Hb_000236_240 Hb_000260_100--Hb_000236_240 Hb_000260_100--Hb_001329_130 Hb_000230_560 Hb_000230_560 Hb_000260_100--Hb_000230_560 Hb_007007_060 Hb_007007_060 Hb_000260_100--Hb_007007_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3902 8.7708 17.1196 7.37812 12.2916 12.0719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.28543 10.7235 4.6732 6.08408 7.40903

CAGE analysis