Hb_000926_180

Information

Type -
Description -
Location Contig926: 213800-217397
Sequence    

Annotation

kegg
ID rcu:RCOM_0752450
description proline synthetase associated protein, putative
nr
ID XP_002529455.1
description proline synthetase associated protein, putative [Ricinus communis]
swissprot
ID Q3T0G5
description Proline synthase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1
trembl
ID B9STY6
description Proline synthetase associated protein, putative OS=Ricinus communis GN=RCOM_0752450 PE=3 SV=1
Gene Ontology
ID GO:0030170
description proline synthase co-transcribed bacterial homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62673: 213806-217384
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_180 0.0 - - proline synthetase associated protein, putative [Ricinus communis]
2 Hb_007313_090 0.0770170042 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001269_640 0.0850078164 - - hypothetical protein CISIN_1g032720mg [Citrus sinensis]
4 Hb_027043_020 0.0893125929 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004785_190 0.0930304325 - - PHD finger family protein [Populus trichocarpa]
6 Hb_002639_150 0.0952249878 - - -
7 Hb_001427_050 0.0956367395 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
8 Hb_003687_230 0.0996483639 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
9 Hb_001195_260 0.1035055178 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
10 Hb_000390_130 0.1037352861 - - PREDICTED: dnaJ protein ERDJ3B isoform X2 [Jatropha curcas]
11 Hb_002820_110 0.1071163877 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
12 Hb_000610_010 0.1095469374 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
13 Hb_058972_010 0.1102431557 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
14 Hb_001329_130 0.1115109977 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000661_140 0.1115795364 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
16 Hb_010315_060 0.1126293453 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
17 Hb_000576_050 0.1137461851 - - Kinase superfamily protein [Theobroma cacao]
18 Hb_000976_260 0.1144104339 - - -
19 Hb_003292_040 0.1153963795 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
20 Hb_001586_040 0.1159641563 - - hypothetical protein JCGZ_17187 [Jatropha curcas]

Gene co-expression network

sample Hb_000926_180 Hb_000926_180 Hb_007313_090 Hb_007313_090 Hb_000926_180--Hb_007313_090 Hb_001269_640 Hb_001269_640 Hb_000926_180--Hb_001269_640 Hb_027043_020 Hb_027043_020 Hb_000926_180--Hb_027043_020 Hb_004785_190 Hb_004785_190 Hb_000926_180--Hb_004785_190 Hb_002639_150 Hb_002639_150 Hb_000926_180--Hb_002639_150 Hb_001427_050 Hb_001427_050 Hb_000926_180--Hb_001427_050 Hb_000576_050 Hb_000576_050 Hb_007313_090--Hb_000576_050 Hb_000836_170 Hb_000836_170 Hb_007313_090--Hb_000836_170 Hb_007313_090--Hb_004785_190 Hb_058972_010 Hb_058972_010 Hb_007313_090--Hb_058972_010 Hb_007313_090--Hb_027043_020 Hb_010315_060 Hb_010315_060 Hb_001269_640--Hb_010315_060 Hb_000331_250 Hb_000331_250 Hb_001269_640--Hb_000331_250 Hb_000422_030 Hb_000422_030 Hb_001269_640--Hb_000422_030 Hb_001269_640--Hb_027043_020 Hb_001195_260 Hb_001195_260 Hb_001269_640--Hb_001195_260 Hb_002918_030 Hb_002918_030 Hb_027043_020--Hb_002918_030 Hb_027043_020--Hb_002639_150 Hb_002495_040 Hb_002495_040 Hb_027043_020--Hb_002495_040 Hb_003683_050 Hb_003683_050 Hb_027043_020--Hb_003683_050 Hb_000260_100 Hb_000260_100 Hb_027043_020--Hb_000260_100 Hb_001936_080 Hb_001936_080 Hb_027043_020--Hb_001936_080 Hb_000926_310 Hb_000926_310 Hb_004785_190--Hb_000926_310 Hb_000610_010 Hb_000610_010 Hb_004785_190--Hb_000610_010 Hb_000661_140 Hb_000661_140 Hb_004785_190--Hb_000661_140 Hb_003687_230 Hb_003687_230 Hb_004785_190--Hb_003687_230 Hb_000009_530 Hb_000009_530 Hb_004785_190--Hb_000009_530 Hb_002296_050 Hb_002296_050 Hb_004785_190--Hb_002296_050 Hb_002639_150--Hb_000661_140 Hb_002639_150--Hb_000926_310 Hb_005288_150 Hb_005288_150 Hb_002639_150--Hb_005288_150 Hb_002639_150--Hb_058972_010 Hb_002639_150--Hb_003687_230 Hb_020367_050 Hb_020367_050 Hb_002639_150--Hb_020367_050 Hb_002292_010 Hb_002292_010 Hb_001427_050--Hb_002292_010 Hb_001427_050--Hb_003687_230 Hb_007007_050 Hb_007007_050 Hb_001427_050--Hb_007007_050 Hb_001427_050--Hb_002639_150 Hb_003467_010 Hb_003467_010 Hb_001427_050--Hb_003467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.4022 12.1306 31.6423 12.7333 24.4557 21.4707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.9038 24.6797 6.63971 4.94501 7.86155

CAGE analysis