Hb_001269_640

Information

Type -
Description -
Location Contig1269: 661908-667579
Sequence    

Annotation

kegg
ID tcc:TCM_019945
description SNARE-like superfamily protein isoform 1
nr
ID KDO63967.1
description hypothetical protein CISIN_1g032720mg [Citrus sinensis]
swissprot
ID Q9VUZ1
description Probable trafficking protein particle complex subunit 2 OS=Drosophila melanogaster GN=Trs20 PE=2 SV=2
trembl
ID A0A067FKI3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032720mg PE=4 SV=1
Gene Ontology
ID GO:0005737
description trafficking protein particle complex subunit 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08251: 663701-667481 , PASA_asmbl_08252: 663711-667481 , PASA_asmbl_08253: 666398-666663 , PASA_asmbl_08255: 663973-664241 , PASA_asmbl_08256: 663718-663972
cDNA
(Sanger)
(ID:Location)		 008_F11.ab1: 663704-667460 , 017_F04.ab1: 663711-667481

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_640 0.0 - - hypothetical protein CISIN_1g032720mg [Citrus sinensis]
2 Hb_000926_180 0.0850078164 - - proline synthetase associated protein, putative [Ricinus communis]
3 Hb_010315_060 0.0891547483 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
4 Hb_000331_250 0.0908008263 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
5 Hb_000422_030 0.100279321 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
6 Hb_027043_020 0.1040332627 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001195_260 0.1049163443 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
8 Hb_011013_010 0.1075553351 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
9 Hb_002639_150 0.1115273812 - - -
10 Hb_007313_090 0.1119073892 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000392_230 0.1135327094 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000610_010 0.1138669057 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
13 Hb_004934_030 0.1150974116 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
14 Hb_058972_010 0.115263362 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
15 Hb_000649_230 0.1152842602 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
16 Hb_121937_010 0.1184341807 - - hypothetical protein B456_013G261900 [Gossypium raimondii]
17 Hb_004363_010 0.1206875546 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
18 Hb_003687_230 0.1208185512 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
19 Hb_158144_010 0.1210039805 - - -
20 Hb_000661_140 0.121176156 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_640 Hb_001269_640 Hb_000926_180 Hb_000926_180 Hb_001269_640--Hb_000926_180 Hb_010315_060 Hb_010315_060 Hb_001269_640--Hb_010315_060 Hb_000331_250 Hb_000331_250 Hb_001269_640--Hb_000331_250 Hb_000422_030 Hb_000422_030 Hb_001269_640--Hb_000422_030 Hb_027043_020 Hb_027043_020 Hb_001269_640--Hb_027043_020 Hb_001195_260 Hb_001195_260 Hb_001269_640--Hb_001195_260 Hb_007313_090 Hb_007313_090 Hb_000926_180--Hb_007313_090 Hb_000926_180--Hb_027043_020 Hb_004785_190 Hb_004785_190 Hb_000926_180--Hb_004785_190 Hb_002639_150 Hb_002639_150 Hb_000926_180--Hb_002639_150 Hb_001427_050 Hb_001427_050 Hb_000926_180--Hb_001427_050 Hb_000392_230 Hb_000392_230 Hb_010315_060--Hb_000392_230 Hb_010315_060--Hb_001195_260 Hb_000649_230 Hb_000649_230 Hb_010315_060--Hb_000649_230 Hb_058972_010 Hb_058972_010 Hb_010315_060--Hb_058972_010 Hb_004122_040 Hb_004122_040 Hb_010315_060--Hb_004122_040 Hb_022132_050 Hb_022132_050 Hb_010315_060--Hb_022132_050 Hb_004934_030 Hb_004934_030 Hb_000331_250--Hb_004934_030 Hb_005773_060 Hb_005773_060 Hb_000331_250--Hb_005773_060 Hb_000000_360 Hb_000000_360 Hb_000331_250--Hb_000000_360 Hb_003544_020 Hb_003544_020 Hb_000331_250--Hb_003544_020 Hb_121937_010 Hb_121937_010 Hb_000331_250--Hb_121937_010 Hb_000422_030--Hb_000649_230 Hb_000690_190 Hb_000690_190 Hb_000422_030--Hb_000690_190 Hb_156635_010 Hb_156635_010 Hb_000422_030--Hb_156635_010 Hb_000422_030--Hb_010315_060 Hb_000422_030--Hb_022132_050 Hb_002918_030 Hb_002918_030 Hb_027043_020--Hb_002918_030 Hb_027043_020--Hb_002639_150 Hb_002495_040 Hb_002495_040 Hb_027043_020--Hb_002495_040 Hb_003683_050 Hb_003683_050 Hb_027043_020--Hb_003683_050 Hb_000260_100 Hb_000260_100 Hb_027043_020--Hb_000260_100 Hb_001936_080 Hb_001936_080 Hb_027043_020--Hb_001936_080 Hb_001195_260--Hb_058972_010 Hb_001195_260--Hb_000392_230 Hb_001195_260--Hb_004122_040 Hb_000610_010 Hb_000610_010 Hb_001195_260--Hb_000610_010 Hb_000751_030 Hb_000751_030 Hb_001195_260--Hb_000751_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.6802 11.4243 32.3689 20.4117 18.4833 19.0775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1798 27.6982 9.46746 4.57265 7.3058

CAGE analysis