Hb_121937_010

Information

Type -
Description -
Location Contig121937: 979-1921
Sequence    

Annotation

kegg
ID rcu:RCOM_0732630
description C-4 methyl sterol oxidase, putative (EC:1.14.13.72)
nr
ID KJB83735.1
description hypothetical protein B456_013G261900 [Gossypium raimondii]
swissprot
ID Q8VWZ8
description Methylsterol monooxygenase 2-2 OS=Arabidopsis thaliana GN=SMO2-2 PE=2 SV=1
trembl
ID A0A0D2W9L9
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G261900 PE=4 SV=1
Gene Ontology
ID GO:0005789
description methylsterol monooxygenase 2-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121937_010 0.0 - - hypothetical protein B456_013G261900 [Gossypium raimondii]
2 Hb_000690_160 0.093328536 - - PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]
3 Hb_000347_540 0.100866337 - - protein binding protein, putative [Ricinus communis]
4 Hb_001136_070 0.1010916525 - - Transmembrane protein TPARL, putative [Ricinus communis]
5 Hb_171376_010 0.1012516692 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
6 Hb_004934_030 0.1022774302 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
7 Hb_002374_570 0.1040652791 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
8 Hb_000046_040 0.1056956248 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000331_250 0.1062056588 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
10 Hb_006817_010 0.1113599707 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
11 Hb_000000_210 0.1114296029 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
12 Hb_000649_230 0.1118440056 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
13 Hb_012725_070 0.1123131011 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]
14 Hb_000768_170 0.1132819686 - - hypothetical protein JCGZ_02624 [Jatropha curcas]
15 Hb_003057_090 0.1147818558 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
16 Hb_016467_010 0.1161470204 - - hypothetical protein POPTR_0004s18340g [Populus trichocarpa]
17 Hb_001269_640 0.1184341807 - - hypothetical protein CISIN_1g032720mg [Citrus sinensis]
18 Hb_001579_030 0.118957064 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
19 Hb_002685_040 0.1222428157 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
20 Hb_000866_010 0.1236211107 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_121937_010 Hb_121937_010 Hb_000690_160 Hb_000690_160 Hb_121937_010--Hb_000690_160 Hb_000347_540 Hb_000347_540 Hb_121937_010--Hb_000347_540 Hb_001136_070 Hb_001136_070 Hb_121937_010--Hb_001136_070 Hb_171376_010 Hb_171376_010 Hb_121937_010--Hb_171376_010 Hb_004934_030 Hb_004934_030 Hb_121937_010--Hb_004934_030 Hb_002374_570 Hb_002374_570 Hb_121937_010--Hb_002374_570 Hb_000866_010 Hb_000866_010 Hb_000690_160--Hb_000866_010 Hb_000753_240 Hb_000753_240 Hb_000690_160--Hb_000753_240 Hb_075751_010 Hb_075751_010 Hb_000690_160--Hb_075751_010 Hb_006817_010 Hb_006817_010 Hb_000690_160--Hb_006817_010 Hb_004440_020 Hb_004440_020 Hb_000690_160--Hb_004440_020 Hb_000768_170 Hb_000768_170 Hb_000690_160--Hb_000768_170 Hb_001579_030 Hb_001579_030 Hb_000347_540--Hb_001579_030 Hb_001662_070 Hb_001662_070 Hb_000347_540--Hb_001662_070 Hb_000815_320 Hb_000815_320 Hb_000347_540--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_000347_540--Hb_000787_050 Hb_004324_070 Hb_004324_070 Hb_000347_540--Hb_004324_070 Hb_025645_010 Hb_025645_010 Hb_000347_540--Hb_025645_010 Hb_000046_040 Hb_000046_040 Hb_001136_070--Hb_000046_040 Hb_000058_130 Hb_000058_130 Hb_001136_070--Hb_000058_130 Hb_000579_120 Hb_000579_120 Hb_001136_070--Hb_000579_120 Hb_011618_050 Hb_011618_050 Hb_001136_070--Hb_011618_050 Hb_000649_230 Hb_000649_230 Hb_001136_070--Hb_000649_230 Hb_000375_350 Hb_000375_350 Hb_171376_010--Hb_000375_350 Hb_012258_010 Hb_012258_010 Hb_171376_010--Hb_012258_010 Hb_002304_150 Hb_002304_150 Hb_171376_010--Hb_002304_150 Hb_171376_010--Hb_000690_160 Hb_000869_020 Hb_000869_020 Hb_171376_010--Hb_000869_020 Hb_003728_060 Hb_003728_060 Hb_171376_010--Hb_003728_060 Hb_000694_040 Hb_000694_040 Hb_004934_030--Hb_000694_040 Hb_003607_150 Hb_003607_150 Hb_004934_030--Hb_003607_150 Hb_005186_050 Hb_005186_050 Hb_004934_030--Hb_005186_050 Hb_000331_250 Hb_000331_250 Hb_004934_030--Hb_000331_250 Hb_000000_210 Hb_000000_210 Hb_004934_030--Hb_000000_210 Hb_001998_120 Hb_001998_120 Hb_004934_030--Hb_001998_120 Hb_002016_170 Hb_002016_170 Hb_002374_570--Hb_002016_170 Hb_118419_010 Hb_118419_010 Hb_002374_570--Hb_118419_010 Hb_001124_090 Hb_001124_090 Hb_002374_570--Hb_001124_090 Hb_000457_180 Hb_000457_180 Hb_002374_570--Hb_000457_180 Hb_001318_250 Hb_001318_250 Hb_002374_570--Hb_001318_250 Hb_002374_570--Hb_003728_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.7707 13.7412 54.1186 39.6875 33.3225 21.9882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.594 44.2708 36.7281 9.24831 21.5913

CAGE analysis