Hb_004934_030

Information

Type -
Description -
Location Contig4934: 20460-23790
Sequence    

Annotation

kegg
ID cmo:103502835
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
nr
ID XP_008465169.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
swissprot
ID Q9FIJ2
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Arabidopsis thaliana GN=At5g47890 PE=3 SV=1
trembl
ID A0A0A0LDA2
description Uncharacterized protein OS=Cucumis sativus GN=Csa_3G845450 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45376: 20730-23798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004934_030 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
2 Hb_000694_040 0.0779689781 - - Uncharacterized protein isoform 1 [Theobroma cacao]
3 Hb_003607_150 0.082075516 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
4 Hb_005186_050 0.0830239889 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
5 Hb_000331_250 0.0892506948 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
6 Hb_000000_210 0.0936574948 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
7 Hb_001998_120 0.0946962845 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
8 Hb_002685_040 0.0956916047 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
9 Hb_000000_360 0.0958377368 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
10 Hb_003057_090 0.0990861686 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
11 Hb_001195_480 0.1019809464 - - cop9 complex subunit, putative [Ricinus communis]
12 Hb_121937_010 0.1022774302 - - hypothetical protein B456_013G261900 [Gossypium raimondii]
13 Hb_007477_070 0.1026138887 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
14 Hb_003069_010 0.1046872783 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
15 Hb_002374_170 0.1073193767 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
16 Hb_003363_110 0.1076146361 - - protein with unknown function [Ricinus communis]
17 Hb_001534_120 0.1080925707 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
18 Hb_000251_070 0.1084682784 - - hypothetical protein L484_010641 [Morus notabilis]
19 Hb_001476_070 0.1085330084 - - MinE protein [Manihot esculenta]
20 Hb_000025_230 0.1088036762 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]

Gene co-expression network

sample Hb_004934_030 Hb_004934_030 Hb_000694_040 Hb_000694_040 Hb_004934_030--Hb_000694_040 Hb_003607_150 Hb_003607_150 Hb_004934_030--Hb_003607_150 Hb_005186_050 Hb_005186_050 Hb_004934_030--Hb_005186_050 Hb_000331_250 Hb_000331_250 Hb_004934_030--Hb_000331_250 Hb_000000_210 Hb_000000_210 Hb_004934_030--Hb_000000_210 Hb_001998_120 Hb_001998_120 Hb_004934_030--Hb_001998_120 Hb_000000_360 Hb_000000_360 Hb_000694_040--Hb_000000_360 Hb_007477_070 Hb_007477_070 Hb_000694_040--Hb_007477_070 Hb_002374_170 Hb_002374_170 Hb_000694_040--Hb_002374_170 Hb_000694_040--Hb_000000_210 Hb_004787_060 Hb_004787_060 Hb_000694_040--Hb_004787_060 Hb_003607_150--Hb_005186_050 Hb_003069_010 Hb_003069_010 Hb_003607_150--Hb_003069_010 Hb_000251_070 Hb_000251_070 Hb_003607_150--Hb_000251_070 Hb_002685_040 Hb_002685_040 Hb_003607_150--Hb_002685_040 Hb_007154_020 Hb_007154_020 Hb_003607_150--Hb_007154_020 Hb_028841_030 Hb_028841_030 Hb_003607_150--Hb_028841_030 Hb_005186_050--Hb_003069_010 Hb_005186_050--Hb_007154_020 Hb_000362_200 Hb_000362_200 Hb_005186_050--Hb_000362_200 Hb_001512_060 Hb_001512_060 Hb_005186_050--Hb_001512_060 Hb_005186_050--Hb_000251_070 Hb_001269_640 Hb_001269_640 Hb_000331_250--Hb_001269_640 Hb_005773_060 Hb_005773_060 Hb_000331_250--Hb_005773_060 Hb_000331_250--Hb_000000_360 Hb_003544_020 Hb_003544_020 Hb_000331_250--Hb_003544_020 Hb_121937_010 Hb_121937_010 Hb_000331_250--Hb_121937_010 Hb_180424_010 Hb_180424_010 Hb_000000_210--Hb_180424_010 Hb_048476_110 Hb_048476_110 Hb_000000_210--Hb_048476_110 Hb_011519_010 Hb_011519_010 Hb_000000_210--Hb_011519_010 Hb_000853_430 Hb_000853_430 Hb_000000_210--Hb_000853_430 Hb_004678_040 Hb_004678_040 Hb_000000_210--Hb_004678_040 Hb_012016_010 Hb_012016_010 Hb_001998_120--Hb_012016_010 Hb_000633_020 Hb_000633_020 Hb_001998_120--Hb_000633_020 Hb_000444_080 Hb_000444_080 Hb_001998_120--Hb_000444_080 Hb_000260_800 Hb_000260_800 Hb_001998_120--Hb_000260_800 Hb_001476_070 Hb_001476_070 Hb_001998_120--Hb_001476_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
267.427 69.1105 308.393 122.551 196.551 124.723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
239.802 311.08 154.232 77.0913 74.5944

CAGE analysis