Hb_001476_070

Information

Type -
Description -
Location Contig1476: 49839-52609
Sequence    

Annotation

kegg
ID rcu:RCOM_1622070
description hypothetical protein
nr
ID AFC37489.1
description MinE protein [Manihot esculenta]
swissprot
ID Q9C4Z7
description Cell division topological specificity factor homolog, chloroplastic OS=Arabidopsis thaliana GN=MINE1 PE=1 SV=1
trembl
ID H9AY26
description MinE protein OS=Manihot esculenta GN=minE PE=2 SV=1
Gene Ontology
ID GO:0009706
description cell division topological specificity factor chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12028: 50003-52797 , PASA_asmbl_12031: 51743-52041 , PASA_asmbl_12032: 50206-50338 , PASA_asmbl_12033: 51021-51121
cDNA
(Sanger)
(ID:Location)		 020_F14.ab1: 52407-52715 , 039_I10.ab1: 50003-52493

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001476_070 0.0 - - MinE protein [Manihot esculenta]
2 Hb_002477_300 0.102969887 - - transcription factor, putative [Ricinus communis]
3 Hb_004934_030 0.1085330084 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
4 Hb_001998_120 0.1102853379 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
5 Hb_004449_170 0.1167517191 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
6 Hb_146673_010 0.1190855219 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
7 Hb_006360_030 0.1209503646 - - -
8 Hb_029510_020 0.1253223906 - - hypothetical protein JCGZ_06306 [Jatropha curcas]
9 Hb_012016_010 0.1278372744 - - PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Jatropha curcas]
10 Hb_003057_090 0.132933169 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
11 Hb_000633_020 0.1346889126 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
12 Hb_000144_080 0.1363540505 - - PREDICTED: uncharacterized protein LOC104609774 [Nelumbo nucifera]
13 Hb_020805_080 0.1371394615 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
14 Hb_000465_090 0.1387545385 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
15 Hb_002168_060 0.1403158608 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
16 Hb_006694_020 0.1414607174 - - PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana tomentosiformis]
17 Hb_002946_190 0.1416835478 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
18 Hb_001377_030 0.1421140312 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
19 Hb_000185_210 0.1435114729 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
20 Hb_001329_290 0.1443842089 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]

Gene co-expression network

sample Hb_001476_070 Hb_001476_070 Hb_002477_300 Hb_002477_300 Hb_001476_070--Hb_002477_300 Hb_004934_030 Hb_004934_030 Hb_001476_070--Hb_004934_030 Hb_001998_120 Hb_001998_120 Hb_001476_070--Hb_001998_120 Hb_004449_170 Hb_004449_170 Hb_001476_070--Hb_004449_170 Hb_146673_010 Hb_146673_010 Hb_001476_070--Hb_146673_010 Hb_006360_030 Hb_006360_030 Hb_001476_070--Hb_006360_030 Hb_002477_300--Hb_004449_170 Hb_002477_300--Hb_146673_010 Hb_000465_090 Hb_000465_090 Hb_002477_300--Hb_000465_090 Hb_000731_160 Hb_000731_160 Hb_002477_300--Hb_000731_160 Hb_001329_290 Hb_001329_290 Hb_002477_300--Hb_001329_290 Hb_001012_010 Hb_001012_010 Hb_002477_300--Hb_001012_010 Hb_000694_040 Hb_000694_040 Hb_004934_030--Hb_000694_040 Hb_003607_150 Hb_003607_150 Hb_004934_030--Hb_003607_150 Hb_005186_050 Hb_005186_050 Hb_004934_030--Hb_005186_050 Hb_000331_250 Hb_000331_250 Hb_004934_030--Hb_000331_250 Hb_000000_210 Hb_000000_210 Hb_004934_030--Hb_000000_210 Hb_004934_030--Hb_001998_120 Hb_012016_010 Hb_012016_010 Hb_001998_120--Hb_012016_010 Hb_000633_020 Hb_000633_020 Hb_001998_120--Hb_000633_020 Hb_000444_080 Hb_000444_080 Hb_001998_120--Hb_000444_080 Hb_000260_800 Hb_000260_800 Hb_001998_120--Hb_000260_800 Hb_004449_170--Hb_001329_290 Hb_005588_030 Hb_005588_030 Hb_004449_170--Hb_005588_030 Hb_004787_060 Hb_004787_060 Hb_004449_170--Hb_004787_060 Hb_001512_060 Hb_001512_060 Hb_004449_170--Hb_001512_060 Hb_000286_070 Hb_000286_070 Hb_004449_170--Hb_000286_070 Hb_146673_010--Hb_000633_020 Hb_146673_010--Hb_000465_090 Hb_002946_190 Hb_002946_190 Hb_146673_010--Hb_002946_190 Hb_003077_020 Hb_003077_020 Hb_146673_010--Hb_003077_020 Hb_146673_010--Hb_000731_160 Hb_002783_270 Hb_002783_270 Hb_006360_030--Hb_002783_270 Hb_004096_090 Hb_004096_090 Hb_006360_030--Hb_004096_090 Hb_021419_020 Hb_021419_020 Hb_006360_030--Hb_021419_020 Hb_001341_090 Hb_001341_090 Hb_006360_030--Hb_001341_090 Hb_005054_060 Hb_005054_060 Hb_006360_030--Hb_005054_060 Hb_000690_190 Hb_000690_190 Hb_006360_030--Hb_000690_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.3595 7.02985 67.4206 20.0078 40.1728 25.8078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.7112 70.3521 20.1599 9.45201 26.5834

CAGE analysis