Hb_005588_030

Information

Type -
Description -
Location Contig5588: 28037-31917
Sequence    

Annotation

kegg
ID egr:104447919
description 26S proteasome non-ATPase regulatory subunit 14 homolog
nr
ID XP_010059964.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
swissprot
ID Q9LT08
description 26S proteasome non-ATPase regulatory subunit 14 homolog OS=Arabidopsis thaliana GN=RPN11 PE=1 SV=1
trembl
ID A0A059BLA1
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00252 PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 14 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48621: 28118-31847 , PASA_asmbl_48622: 28130-31847
cDNA
(Sanger)
(ID:Location)		 011_D17.ab1: 28123-30577 , 030_M20.ab1: 28118-30839

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005588_030 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
2 Hb_001012_010 0.0555618229 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
3 Hb_004116_060 0.0661703897 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
4 Hb_004093_090 0.0663338712 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
5 Hb_000107_030 0.0678135 - - conserved hypothetical protein [Ricinus communis]
6 Hb_073973_130 0.0686708883 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
7 Hb_120410_010 0.0733872925 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
8 Hb_004449_170 0.0739375471 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
9 Hb_000610_010 0.0741824704 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
10 Hb_000465_090 0.0772051168 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
11 Hb_153553_030 0.0775030913 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
12 Hb_000959_210 0.0795127028 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
13 Hb_000009_530 0.0799162393 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
14 Hb_000836_170 0.0804169147 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
15 Hb_000649_230 0.0806923023 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
16 Hb_002530_030 0.0812123389 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
17 Hb_022132_050 0.0826774711 - - GTP binding protein, putative [Ricinus communis]
18 Hb_005144_090 0.0834761155 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
19 Hb_000362_200 0.0846843158 - - exonuclease family protein [Populus trichocarpa]
20 Hb_001329_290 0.0851668379 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]

Gene co-expression network

sample Hb_005588_030 Hb_005588_030 Hb_001012_010 Hb_001012_010 Hb_005588_030--Hb_001012_010 Hb_004116_060 Hb_004116_060 Hb_005588_030--Hb_004116_060 Hb_004093_090 Hb_004093_090 Hb_005588_030--Hb_004093_090 Hb_000107_030 Hb_000107_030 Hb_005588_030--Hb_000107_030 Hb_073973_130 Hb_073973_130 Hb_005588_030--Hb_073973_130 Hb_120410_010 Hb_120410_010 Hb_005588_030--Hb_120410_010 Hb_000465_090 Hb_000465_090 Hb_001012_010--Hb_000465_090 Hb_002530_030 Hb_002530_030 Hb_001012_010--Hb_002530_030 Hb_009421_020 Hb_009421_020 Hb_001012_010--Hb_009421_020 Hb_009545_080 Hb_009545_080 Hb_001012_010--Hb_009545_080 Hb_000768_090 Hb_000768_090 Hb_001012_010--Hb_000768_090 Hb_004116_060--Hb_120410_010 Hb_004116_060--Hb_002530_030 Hb_000093_160 Hb_000093_160 Hb_004116_060--Hb_000093_160 Hb_004096_090 Hb_004096_090 Hb_004116_060--Hb_004096_090 Hb_001142_030 Hb_001142_030 Hb_004116_060--Hb_001142_030 Hb_000610_010 Hb_000610_010 Hb_004093_090--Hb_000610_010 Hb_004093_090--Hb_120410_010 Hb_000959_210 Hb_000959_210 Hb_004093_090--Hb_000959_210 Hb_000362_200 Hb_000362_200 Hb_004093_090--Hb_000362_200 Hb_000009_530 Hb_000009_530 Hb_004093_090--Hb_000009_530 Hb_003579_050 Hb_003579_050 Hb_000107_030--Hb_003579_050 Hb_005144_090 Hb_005144_090 Hb_000107_030--Hb_005144_090 Hb_000836_170 Hb_000836_170 Hb_000107_030--Hb_000836_170 Hb_001186_090 Hb_001186_090 Hb_000107_030--Hb_001186_090 Hb_000107_030--Hb_073973_130 Hb_000107_190 Hb_000107_190 Hb_073973_130--Hb_000107_190 Hb_027428_010 Hb_027428_010 Hb_073973_130--Hb_027428_010 Hb_002872_030 Hb_002872_030 Hb_073973_130--Hb_002872_030 Hb_022132_050 Hb_022132_050 Hb_073973_130--Hb_022132_050 Hb_005337_090 Hb_005337_090 Hb_073973_130--Hb_005337_090 Hb_073973_130--Hb_000610_010 Hb_008453_140 Hb_008453_140 Hb_120410_010--Hb_008453_140 Hb_120410_010--Hb_001142_030 Hb_120410_010--Hb_002530_030 Hb_002740_030 Hb_002740_030 Hb_120410_010--Hb_002740_030 Hb_010381_090 Hb_010381_090 Hb_120410_010--Hb_010381_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.6124 42.425 103.926 43.0082 79.7153 73.3339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.9171 101.763 51.3 45.9043 39.1643

CAGE analysis