Hb_000362_200

Information

Type -
Description -
Location Contig362: 189158-195634
Sequence    

Annotation

kegg
ID pop:POPTR_0001s38250g
description POPTRDRAFT_815795; exonuclease family protein
nr
ID XP_002300407.1
description exonuclease family protein [Populus trichocarpa]
swissprot
ID Q9GZR2
description RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2
trembl
ID B9GGE5
description Exonuclease family protein OS=Populus trichocarpa GN=POPTR_0001s38250g PE=4 SV=1
Gene Ontology
ID GO:0003676
description rna exonuclease 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37218: 194010-195140 , PASA_asmbl_37219: 189171-195519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000362_200 0.0 - - exonuclease family protein [Populus trichocarpa]
2 Hb_001512_060 0.0635524875 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
3 Hb_001534_120 0.0650191033 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
4 Hb_009421_020 0.0690578612 - - PREDICTED: caltractin-like [Jatropha curcas]
5 Hb_005186_050 0.0698303554 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
6 Hb_004093_090 0.0710476925 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
7 Hb_007477_070 0.0764782466 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
8 Hb_000853_430 0.0774921554 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
9 Hb_001195_480 0.077521991 - - cop9 complex subunit, putative [Ricinus communis]
10 Hb_001305_010 0.077628718 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
11 Hb_010921_010 0.0778260254 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
12 Hb_002026_220 0.0783657602 - - Glutamate--cysteine ligase, chloroplast precursor, putative [Ricinus communis]
13 Hb_001012_010 0.0790847493 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
14 Hb_001821_010 0.0811414363 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
15 Hb_010222_020 0.0811784726 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
16 Hb_000815_320 0.0817752618 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
17 Hb_000771_120 0.0821462276 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
18 Hb_004096_090 0.0828227782 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
19 Hb_005697_060 0.084284008 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
20 Hb_000656_240 0.0844370169 - - proteasome subunit alpha type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000362_200 Hb_000362_200 Hb_001512_060 Hb_001512_060 Hb_000362_200--Hb_001512_060 Hb_001534_120 Hb_001534_120 Hb_000362_200--Hb_001534_120 Hb_009421_020 Hb_009421_020 Hb_000362_200--Hb_009421_020 Hb_005186_050 Hb_005186_050 Hb_000362_200--Hb_005186_050 Hb_004093_090 Hb_004093_090 Hb_000362_200--Hb_004093_090 Hb_007477_070 Hb_007477_070 Hb_000362_200--Hb_007477_070 Hb_010921_010 Hb_010921_010 Hb_001512_060--Hb_010921_010 Hb_001512_060--Hb_001534_120 Hb_001512_060--Hb_007477_070 Hb_007154_020 Hb_007154_020 Hb_001512_060--Hb_007154_020 Hb_002346_020 Hb_002346_020 Hb_001512_060--Hb_002346_020 Hb_001195_480 Hb_001195_480 Hb_001534_120--Hb_001195_480 Hb_001534_120--Hb_007477_070 Hb_001534_120--Hb_010921_010 Hb_002534_150 Hb_002534_150 Hb_001534_120--Hb_002534_150 Hb_000365_120 Hb_000365_120 Hb_009421_020--Hb_000365_120 Hb_000866_010 Hb_000866_010 Hb_009421_020--Hb_000866_010 Hb_007632_030 Hb_007632_030 Hb_009421_020--Hb_007632_030 Hb_009421_020--Hb_001512_060 Hb_000329_320 Hb_000329_320 Hb_009421_020--Hb_000329_320 Hb_003069_010 Hb_003069_010 Hb_005186_050--Hb_003069_010 Hb_003607_150 Hb_003607_150 Hb_005186_050--Hb_003607_150 Hb_005186_050--Hb_007154_020 Hb_005186_050--Hb_001512_060 Hb_000251_070 Hb_000251_070 Hb_005186_050--Hb_000251_070 Hb_000610_010 Hb_000610_010 Hb_004093_090--Hb_000610_010 Hb_005588_030 Hb_005588_030 Hb_004093_090--Hb_005588_030 Hb_120410_010 Hb_120410_010 Hb_004093_090--Hb_120410_010 Hb_000959_210 Hb_000959_210 Hb_004093_090--Hb_000959_210 Hb_000009_530 Hb_000009_530 Hb_004093_090--Hb_000009_530 Hb_025645_010 Hb_025645_010 Hb_007477_070--Hb_025645_010 Hb_001662_070 Hb_001662_070 Hb_007477_070--Hb_001662_070 Hb_000771_120 Hb_000771_120 Hb_007477_070--Hb_000771_120 Hb_007576_040 Hb_007576_040 Hb_007477_070--Hb_007576_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5515 7.6714 17.0998 8.73992 14.07 14.8248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0206 27.0309 15.296 9.91642 8.15987

CAGE analysis