Hb_000251_070

Information

Type -
Description -
Location Contig251: 87464-96982
Sequence    

Annotation

kegg
ID cit:102630090
description coatomer subunit zeta-1-like
nr
ID XP_010100986.1
description hypothetical protein L484_010641 [Morus notabilis]
swissprot
ID Q940S5
description Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1
trembl
ID W9RE44
description Uncharacterized protein OS=Morus notabilis GN=L484_010641 PE=4 SV=1
Gene Ontology
ID GO:0016020
description coatomer subunit zeta-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26229: 87858-90432 , PASA_asmbl_26230: 87870-87971 , PASA_asmbl_26233: 91816-96911 , PASA_asmbl_26234: 91960-96911 , PASA_asmbl_26235: 94791-95094 , PASA_asmbl_26238: 92342-92718 , PASA_asmbl_26246: 91959-92261 , PASA_asmbl_26247: 95790-96197
cDNA
(Sanger)
(ID:Location)		 004_I10.ab1: 87875-90386 , 021_D07.ab1: 91841-96748 , 024_D16.ab1: 87877-90249 , 035_A02.ab1: 91841-96748 , 053_C14.ab1: 87875-90294

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000251_070 0.0 - - hypothetical protein L484_010641 [Morus notabilis]
2 Hb_005186_050 0.072902865 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
3 Hb_004934_110 0.0736271992 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
4 Hb_001662_070 0.0736655033 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
5 Hb_145880_030 0.0737910687 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
6 Hb_003607_150 0.0741231691 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
7 Hb_007154_020 0.0746281544 - - -
8 Hb_011381_060 0.0782370401 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
9 Hb_000787_050 0.082964711 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
10 Hb_010407_040 0.0835111706 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
11 Hb_003363_110 0.0839974163 - - protein with unknown function [Ricinus communis]
12 Hb_000887_020 0.0864296529 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
13 Hb_024682_010 0.088588305 - - sterol isomerase, putative [Ricinus communis]
14 Hb_010921_010 0.088652357 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
15 Hb_000141_040 0.0891380321 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
16 Hb_165132_010 0.0894083625 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
17 Hb_001512_060 0.0899234236 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
18 Hb_000454_050 0.0900542921 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
19 Hb_002685_040 0.0907635021 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
20 Hb_000331_080 0.0907658754 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_000251_070 Hb_000251_070 Hb_005186_050 Hb_005186_050 Hb_000251_070--Hb_005186_050 Hb_004934_110 Hb_004934_110 Hb_000251_070--Hb_004934_110 Hb_001662_070 Hb_001662_070 Hb_000251_070--Hb_001662_070 Hb_145880_030 Hb_145880_030 Hb_000251_070--Hb_145880_030 Hb_003607_150 Hb_003607_150 Hb_000251_070--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_000251_070--Hb_007154_020 Hb_003069_010 Hb_003069_010 Hb_005186_050--Hb_003069_010 Hb_005186_050--Hb_003607_150 Hb_005186_050--Hb_007154_020 Hb_000362_200 Hb_000362_200 Hb_005186_050--Hb_000362_200 Hb_001512_060 Hb_001512_060 Hb_005186_050--Hb_001512_060 Hb_004931_090 Hb_004931_090 Hb_004934_110--Hb_004931_090 Hb_004657_050 Hb_004657_050 Hb_004934_110--Hb_004657_050 Hb_000331_080 Hb_000331_080 Hb_004934_110--Hb_000331_080 Hb_003607_050 Hb_003607_050 Hb_004934_110--Hb_003607_050 Hb_000840_030 Hb_000840_030 Hb_004934_110--Hb_000840_030 Hb_025645_010 Hb_025645_010 Hb_001662_070--Hb_025645_010 Hb_000815_320 Hb_000815_320 Hb_001662_070--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_001662_070--Hb_000787_050 Hb_165132_010 Hb_165132_010 Hb_001662_070--Hb_165132_010 Hb_001821_010 Hb_001821_010 Hb_001662_070--Hb_001821_010 Hb_000347_540 Hb_000347_540 Hb_001662_070--Hb_000347_540 Hb_010407_040 Hb_010407_040 Hb_145880_030--Hb_010407_040 Hb_007778_030 Hb_007778_030 Hb_145880_030--Hb_007778_030 Hb_000141_040 Hb_000141_040 Hb_145880_030--Hb_000141_040 Hb_145880_030--Hb_001662_070 Hb_145880_030--Hb_165132_010 Hb_023226_040 Hb_023226_040 Hb_145880_030--Hb_023226_040 Hb_003607_150--Hb_003069_010 Hb_002685_040 Hb_002685_040 Hb_003607_150--Hb_002685_040 Hb_003607_150--Hb_007154_020 Hb_028841_030 Hb_028841_030 Hb_003607_150--Hb_028841_030 Hb_011381_060 Hb_011381_060 Hb_007154_020--Hb_011381_060 Hb_010661_030 Hb_010661_030 Hb_007154_020--Hb_010661_030 Hb_007154_020--Hb_001512_060 Hb_001348_070 Hb_001348_070 Hb_007154_020--Hb_001348_070 Hb_010921_010 Hb_010921_010 Hb_007154_020--Hb_010921_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
128.885 33.5342 74.6147 50.1397 99.166 70.5963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
140.091 160.794 69.163 34.3333 44.2392

CAGE analysis