Hb_003607_050

Information

Type -
Description -
Location Contig3607: 80479-82754
Sequence    

Annotation

kegg
ID tcc:TCM_003039
description Uncharacterized protein isoform 1
nr
ID XP_012085163.1
description PREDICTED: uncharacterized protein LOC105644428 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JRA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37159: 80512-82844
cDNA
(Sanger)
(ID:Location)		 046_O09.ab1: 80624-82813

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003607_050 0.0 - - PREDICTED: uncharacterized protein LOC105644428 [Jatropha curcas]
2 Hb_003125_190 0.0662070217 - - hypothetical protein POPTR_0015s10960g [Populus trichocarpa]
3 Hb_004934_110 0.0796229195 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
4 Hb_010106_010 0.0803891249 - - PREDICTED: cucumisin-like [Populus euphratica]
5 Hb_000887_020 0.0809462608 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
6 Hb_139518_030 0.0877817719 - - protein kinase atn1, putative [Ricinus communis]
7 Hb_003749_010 0.0901173281 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004195_270 0.0926799277 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
9 Hb_010222_020 0.0959179182 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
10 Hb_001157_020 0.103340258 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
11 Hb_000251_070 0.1071609006 - - hypothetical protein L484_010641 [Morus notabilis]
12 Hb_003683_120 0.1088480005 - - conserved hypothetical protein [Ricinus communis]
13 Hb_024682_010 0.1088904204 - - sterol isomerase, putative [Ricinus communis]
14 Hb_001604_060 0.1099238144 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
15 Hb_000840_030 0.1101390548 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
16 Hb_001983_020 0.1110064816 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
17 Hb_000201_120 0.1110643605 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
18 Hb_000996_140 0.1118362709 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
19 Hb_165132_010 0.1119541579 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
20 Hb_001427_200 0.1121161832 - - PREDICTED: uncharacterized protein LOC105637796 [Jatropha curcas]

Gene co-expression network

sample Hb_003607_050 Hb_003607_050 Hb_003125_190 Hb_003125_190 Hb_003607_050--Hb_003125_190 Hb_004934_110 Hb_004934_110 Hb_003607_050--Hb_004934_110 Hb_010106_010 Hb_010106_010 Hb_003607_050--Hb_010106_010 Hb_000887_020 Hb_000887_020 Hb_003607_050--Hb_000887_020 Hb_139518_030 Hb_139518_030 Hb_003607_050--Hb_139518_030 Hb_003749_010 Hb_003749_010 Hb_003607_050--Hb_003749_010 Hb_003683_110 Hb_003683_110 Hb_003125_190--Hb_003683_110 Hb_003125_190--Hb_000887_020 Hb_003125_190--Hb_010106_010 Hb_003125_190--Hb_139518_030 Hb_000996_140 Hb_000996_140 Hb_003125_190--Hb_000996_140 Hb_004931_090 Hb_004931_090 Hb_004934_110--Hb_004931_090 Hb_000251_070 Hb_000251_070 Hb_004934_110--Hb_000251_070 Hb_004657_050 Hb_004657_050 Hb_004934_110--Hb_004657_050 Hb_000331_080 Hb_000331_080 Hb_004934_110--Hb_000331_080 Hb_000840_030 Hb_000840_030 Hb_004934_110--Hb_000840_030 Hb_000633_020 Hb_000633_020 Hb_010106_010--Hb_000633_020 Hb_000529_030 Hb_000529_030 Hb_010106_010--Hb_000529_030 Hb_010222_020 Hb_010222_020 Hb_010106_010--Hb_010222_020 Hb_002768_030 Hb_002768_030 Hb_010106_010--Hb_002768_030 Hb_024682_010 Hb_024682_010 Hb_000887_020--Hb_024682_010 Hb_000887_020--Hb_000251_070 Hb_000887_020--Hb_004934_110 Hb_004204_120 Hb_004204_120 Hb_000887_020--Hb_004204_120 Hb_001504_110 Hb_001504_110 Hb_139518_030--Hb_001504_110 Hb_001105_030 Hb_001105_030 Hb_139518_030--Hb_001105_030 Hb_001195_280 Hb_001195_280 Hb_139518_030--Hb_001195_280 Hb_153112_020 Hb_153112_020 Hb_139518_030--Hb_153112_020 Hb_001983_020 Hb_001983_020 Hb_003749_010--Hb_001983_020 Hb_003185_080 Hb_003185_080 Hb_003749_010--Hb_003185_080 Hb_001157_020 Hb_001157_020 Hb_003749_010--Hb_001157_020 Hb_002141_030 Hb_002141_030 Hb_003749_010--Hb_002141_030 Hb_004195_270 Hb_004195_270 Hb_003749_010--Hb_004195_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.4207 12.7361 28.1883 16.5179 19.0324 27.6791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.2991 51.3241 27.4412 8.59913 24.6818

CAGE analysis