Hb_001195_280

Information

Type -
Description -
Location Contig1195: 157845-163252
Sequence    

Annotation

kegg
ID rcu:RCOM_1594350
description hypothetical protein
nr
ID XP_009336256.1
description PREDICTED: uncharacterized protein LOC103928873 isoform X1 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05809: 158178-160899 , PASA_asmbl_05811: 162187-163278
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_280 0.0 - - PREDICTED: uncharacterized protein LOC103928873 isoform X1 [Pyrus x bretschneideri]
2 Hb_004735_040 0.0723890026 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]
3 Hb_001105_030 0.0763658875 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
4 Hb_001157_020 0.0769725839 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
5 Hb_002609_020 0.0847319552 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
6 Hb_000059_370 0.0855451004 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
7 Hb_012725_050 0.0884408379 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
8 Hb_003057_100 0.0933750024 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
9 Hb_139518_030 0.0946426438 - - protein kinase atn1, putative [Ricinus communis]
10 Hb_001821_010 0.0950057978 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
11 Hb_000580_090 0.095381883 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
12 Hb_002534_150 0.0957055845 - - catalytic, putative [Ricinus communis]
13 Hb_001552_020 0.095941723 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
14 Hb_032202_190 0.0975375131 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
15 Hb_000120_790 0.0982765634 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
16 Hb_000920_180 0.1000089381 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
17 Hb_008648_010 0.100453222 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
18 Hb_002284_240 0.1005722118 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
19 Hb_012675_050 0.1012144738 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005306_170 0.1012746555 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_001195_280 Hb_001195_280 Hb_004735_040 Hb_004735_040 Hb_001195_280--Hb_004735_040 Hb_001105_030 Hb_001105_030 Hb_001195_280--Hb_001105_030 Hb_001157_020 Hb_001157_020 Hb_001195_280--Hb_001157_020 Hb_002609_020 Hb_002609_020 Hb_001195_280--Hb_002609_020 Hb_000059_370 Hb_000059_370 Hb_001195_280--Hb_000059_370 Hb_012725_050 Hb_012725_050 Hb_001195_280--Hb_012725_050 Hb_004735_040--Hb_002609_020 Hb_001821_010 Hb_001821_010 Hb_004735_040--Hb_001821_010 Hb_004735_040--Hb_001105_030 Hb_001489_060 Hb_001489_060 Hb_004735_040--Hb_001489_060 Hb_000302_010 Hb_000302_010 Hb_004735_040--Hb_000302_010 Hb_001105_030--Hb_000059_370 Hb_001105_030--Hb_001821_010 Hb_001105_030--Hb_012725_050 Hb_001105_030--Hb_001157_020 Hb_000580_090 Hb_000580_090 Hb_001105_030--Hb_000580_090 Hb_000815_320 Hb_000815_320 Hb_001105_030--Hb_000815_320 Hb_028227_020 Hb_028227_020 Hb_001157_020--Hb_028227_020 Hb_001157_020--Hb_012725_050 Hb_001157_020--Hb_001821_010 Hb_001140_370 Hb_001140_370 Hb_001157_020--Hb_001140_370 Hb_001157_020--Hb_000815_320 Hb_002609_020--Hb_001821_010 Hb_009838_080 Hb_009838_080 Hb_002609_020--Hb_009838_080 Hb_000056_200 Hb_000056_200 Hb_002609_020--Hb_000056_200 Hb_000243_030 Hb_000243_030 Hb_002609_020--Hb_000243_030 Hb_002226_070 Hb_002226_070 Hb_002609_020--Hb_002226_070 Hb_000479_090 Hb_000479_090 Hb_000059_370--Hb_000479_090 Hb_000059_370--Hb_002226_070 Hb_000384_100 Hb_000384_100 Hb_000059_370--Hb_000384_100 Hb_002534_150 Hb_002534_150 Hb_000059_370--Hb_002534_150 Hb_000059_370--Hb_001821_010 Hb_012725_050--Hb_001821_010 Hb_012725_050--Hb_028227_020 Hb_002214_040 Hb_002214_040 Hb_012725_050--Hb_002214_040 Hb_000331_080 Hb_000331_080 Hb_012725_050--Hb_000331_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.93002 0.812717 0.996366 0.794299 1.78036 1.34598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.31071 2.15657 1.37752 0.653743 1.0218

CAGE analysis