Hb_000302_010

Information

Type -
Description -
Location Contig302: 9504-13583
Sequence    

Annotation

kegg
ID rcu:RCOM_1540410
description Vesicle-associated membrane protein, putative
nr
ID XP_002515759.1
description Vesicle-associated membrane protein, putative [Ricinus communis]
swissprot
ID Q9M376
description Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1
trembl
ID B9RPU0
description Vesicle-associated membrane protein, putative OS=Ricinus communis GN=RCOM_1540410 PE=4 SV=1
Gene Ontology
ID GO:0005768
description vesicle-associated membrane protein 727

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31775: 9223-9495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_010 0.0 - - Vesicle-associated membrane protein, putative [Ricinus communis]
2 Hb_001489_060 0.072451472 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
3 Hb_004735_040 0.0744968743 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]
4 Hb_001481_170 0.0836698704 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001564_130 0.084914812 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_000580_090 0.0856361453 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
7 Hb_007477_070 0.0890094745 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
8 Hb_021443_070 0.0906591999 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
9 Hb_002609_020 0.0910646132 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
10 Hb_001269_630 0.0924550517 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
11 Hb_001821_010 0.0935037212 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
12 Hb_063716_050 0.093696066 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
13 Hb_000815_320 0.0944288665 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
14 Hb_012340_080 0.0950490168 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
15 Hb_002346_020 0.0953108911 - - -
16 Hb_001662_070 0.0953170551 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
17 Hb_005045_060 0.0959672931 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
18 Hb_007576_040 0.0973808968 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
19 Hb_047503_010 0.0986119789 - - PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
20 Hb_012286_030 0.0990307425 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]

Gene co-expression network

sample Hb_000302_010 Hb_000302_010 Hb_001489_060 Hb_001489_060 Hb_000302_010--Hb_001489_060 Hb_004735_040 Hb_004735_040 Hb_000302_010--Hb_004735_040 Hb_001481_170 Hb_001481_170 Hb_000302_010--Hb_001481_170 Hb_001564_130 Hb_001564_130 Hb_000302_010--Hb_001564_130 Hb_000580_090 Hb_000580_090 Hb_000302_010--Hb_000580_090 Hb_007477_070 Hb_007477_070 Hb_000302_010--Hb_007477_070 Hb_063716_050 Hb_063716_050 Hb_001489_060--Hb_063716_050 Hb_003050_080 Hb_003050_080 Hb_001489_060--Hb_003050_080 Hb_002226_070 Hb_002226_070 Hb_001489_060--Hb_002226_070 Hb_002006_020 Hb_002006_020 Hb_001489_060--Hb_002006_020 Hb_001821_010 Hb_001821_010 Hb_001489_060--Hb_001821_010 Hb_000056_200 Hb_000056_200 Hb_001489_060--Hb_000056_200 Hb_002609_020 Hb_002609_020 Hb_004735_040--Hb_002609_020 Hb_004735_040--Hb_001821_010 Hb_001105_030 Hb_001105_030 Hb_004735_040--Hb_001105_030 Hb_004735_040--Hb_001489_060 Hb_001195_280 Hb_001195_280 Hb_004735_040--Hb_001195_280 Hb_003683_050 Hb_003683_050 Hb_001481_170--Hb_003683_050 Hb_001195_760 Hb_001195_760 Hb_001481_170--Hb_001195_760 Hb_001305_010 Hb_001305_010 Hb_001481_170--Hb_001305_010 Hb_000451_010 Hb_000451_010 Hb_001481_170--Hb_000451_010 Hb_012022_160 Hb_012022_160 Hb_001481_170--Hb_012022_160 Hb_003292_040 Hb_003292_040 Hb_001564_130--Hb_003292_040 Hb_000670_020 Hb_000670_020 Hb_001564_130--Hb_000670_020 Hb_001512_060 Hb_001512_060 Hb_001564_130--Hb_001512_060 Hb_011970_030 Hb_011970_030 Hb_001564_130--Hb_011970_030 Hb_010368_020 Hb_010368_020 Hb_001564_130--Hb_010368_020 Hb_001348_070 Hb_001348_070 Hb_001564_130--Hb_001348_070 Hb_004109_170 Hb_004109_170 Hb_000580_090--Hb_004109_170 Hb_012286_030 Hb_012286_030 Hb_000580_090--Hb_012286_030 Hb_000656_240 Hb_000656_240 Hb_000580_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000580_090--Hb_004116_190 Hb_000815_320 Hb_000815_320 Hb_000580_090--Hb_000815_320 Hb_000580_090--Hb_001105_030 Hb_001534_120 Hb_001534_120 Hb_007477_070--Hb_001534_120 Hb_025645_010 Hb_025645_010 Hb_007477_070--Hb_025645_010 Hb_007477_070--Hb_001512_060 Hb_001662_070 Hb_001662_070 Hb_007477_070--Hb_001662_070 Hb_000771_120 Hb_000771_120 Hb_007477_070--Hb_000771_120 Hb_007576_040 Hb_007576_040 Hb_007477_070--Hb_007576_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.6143 18.4669 34.0023 28.6352 60.3719 33.3409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.62 67.5985 44.0166 19.974 12.7314

CAGE analysis